EY659870

Overview
NameEY659870
Unique NameEY659870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.779e-39
Identity = 78/96 (81.25%), Postives = 88/96 (91.67%), Query Frame = 3
Query:   42 PKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            PKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT+ELVK+T +MKSFKA+DK+
Sbjct:   85 PKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.153e-38
Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 3
Query:   42 PKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            PKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPIA  K  +ELVK+T D+K+FKAYDK+
Sbjct:   85 PKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.841e-37
Identity = 77/96 (80.21%), Postives = 84/96 (87.50%), Query Frame = 3
Query:   42 PKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            PKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  +ELVK+T +MKS  AYDK+
Sbjct:   85 PKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKI 180          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.846e-37
Identity = 77/96 (80.21%), Postives = 84/96 (87.50%), Query Frame = 3
Query:   42 PKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            PKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   ELVK+T +MKS KA+DK+
Sbjct:   85 PKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKI 180          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.014e-34
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 3
Query:   42 PKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            PKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT+ELVK+T DMK F AYDK+
Sbjct:   85 PKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: FIMB2_ARATH (Fimbrin-like protein 2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.160e-28
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 3
Query:  369 ALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVT 623
            A LWQ+MRY +LQLL+NLR HS GKEITDADIL WAN KV+  G  S  +SF+DK+L+ G+FFLELLSAV+PR VNWSLVT G T
Sbjct:  488 AFLWQLMRYTMLQLLRNLRSHSQGKEITDADILNWANRKVKRGGRTSQADSFRDKNLSSGMFFLELLSAVEPRVVNWSLVTNGET 572          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: FIMB1_ARATH (Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 5.557e-25
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 3
Query:  372 LLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKGVT 623
            LLWQ+MR+++LQLLK+LR  + GKE+TDADIL WAN KVR  G +  + SFKDKSL+ G+FFL LL AV+PR VNW+LVTKG T
Sbjct:  489 LLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGET 572          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.112e-24
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   42 PKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            PKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KL
Sbjct:   81 PKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKL 176          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.602e-24
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = 3
Query:   42 PKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            P K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP +ELVK+T DMK    Y KL
Sbjct:   86 PAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKL 181          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: FIMB3_ARATH (Putative fimbrin-like protein 3 OS=Arabidopsis thaliana GN=FIM3 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.602e-24
Identity = 59/126 (46.83%), Postives = 86/126 (68.25%), Query Frame = 3
Query:  246 MPIAPEKPTVELVKVTQDMKS--FKAYDKLLFMNNECWLLFFSALLWQMMRYNVLQLLKNLRFHSHGKEITDADILQWANAKVRISGSQSHMNSFKDKSLADGIFFLELLSAVQPRAVNWSLVTKG 617
            MP    +   ++VK+ ++M+          +   N+  +L F   LWQ+MR ++LQLLK+LR  + GK++TD++I+ WAN KVRI G +S + SFKDKSL+ G+FFL+LL AV+PR VNW+LVTKG
Sbjct:  449 MPFRKVENCNQVVKIGKEMRFSLVNVAGNDIVQGNKKLILGF---LWQLMRTHMLQLLKSLRSRTRGKDMTDSEIISWANRKVRIMGRKSQIESFKDKSLSSGLFFLDLLWAVEPRVVNWNLVTKG 571          
The following BLAST results are available for this feature:
BLAST of EY659870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL131_ARATH1.779e-3981.2560S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL133_ARATH1.153e-3882.2960S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_BRANA2.841e-3780.2160S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA4.846e-3780.2160S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL132_ARATH5.014e-3475.00Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
FIMB2_ARATH9.160e-2869.41Fimbrin-like protein 2 OS=Arabidopsis thaliana GN=... [more]
FIMB1_ARATH5.557e-2565.48Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=... [more]
RL13_TOBAC2.112e-2461.4660S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW3.602e-2455.2160S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
FIMB3_ARATH3.602e-2446.83Putative fimbrin-like protein 3 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659870 ID=EY659870; Name=EY659870; organism=Citrus sinensis; type=EST; length=929bp
TTTCAAAACCACGCGTCCGAGGAACTCTTTGCGATAAGAATCCCAAGAAA
CTGGCTCCGACAATTGGTGTTTCAGTCGATCATCGACGCAAGAACCGTTC
TCTTGAGGGTCTTCAATCTAATGTTCAGAGGCTCAAGACTTACAAGGCTA
AGTTGGTTGTTTTCCCAAGACGTGCTCGCAAGTTCAAGGCTGGTGATTCT
GCCCCTGAGGAATTGGCAACAGCAACTCAAGTACAAGGACCTTACATGCC
CATTGCTCCTGAGAAGCCTACTGTCGAGCTTGTTAAGGTTACTCAAGATA
TGAAGTCCTTCAAGGCTTATGACAAACTCCTTTTTATGAATAACGAATGT
TGGCTTCTTTTCTTTTCAGCATTATTATGGCAAATGATGAGATACAATGT
CCTGCAACTTCTGAAGAACTTGAGATTCCACTCCCATGGGAAGGAAATAA
CTGATGCTGATATTCTGCAATGGGCCAATGCCAAAGTGAGAATCTCAGGA
AGCCAGAGTCACATGAATAGTTTTAAGGATAAGAGTTTGGCAGATGGCAT
CTTTTTTCTTGAGCTACTCAGTGCTGTTCAGCCTAGAGCTGTAAATTGGA
GTCTTGTCACAAAAGGAGTAACGGGTATGTTTTCTTCTAATCATACGCGA
TGTGCGGTTACTTTGGTCGGCAATAGCAGCATGCTTTGGCAAAGAATTTA
GTTTTGACAGTACAATTTGGTTTTATTGTGTGTGATTTTATAATCTAACT
TTTTTCNTATATTCCTTTCGAATTTCATAAATNATGGTGGATAATACTCA
TTCGTTTTGACTTGTTCTTTCTCTTTCAAACTTGGGGAATTTAGATGAGG
AAAAAAAGATGATGCACCTACATATCAGTATTGCAGGAAACTTGGATGCT
CAATATTTTGCTCCCTGAAAACTACTGAG
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