EY659850

Overview
NameEY659850
Unique NameEY659850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659850_ssr241 microsatellite EY659850_ssr241:241..252. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 1.590e-76
Identity = 135/187 (72.19%), Postives = 156/187 (83.42%), Query Frame = 2
Query:  188 TFLEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN--SGKAPFPMNNPWGVYSTLWGADDWGTEVVLRN-RLEKAPF 739
            TF+EDFK  WS++H+RQ+E G+  QLVLDQ++GCGFASKR+YLFGRVSMKIKL+PGDSAGTVTAFYMNS+T  VRDELDFEFLGN++GQPY+VQTNI+A+GKGDREQRVNLWFDP+ DYH YTILW+H HIVFYVDDVPIR YKN  +    +P + P GVYSTLW ADDW T   L      KAPF
Sbjct:   34 TFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPF 220          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 1.943e-74
Identity = 133/208 (63.94%), Postives = 161/208 (77.40%), Query Frame = 2
Query:  125 IXLFVLIYCXVXXSXVLGXXVTFLEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN--SGKAPFPMNNPWGVYSTLWGADDWGTE-VVLRNRLEKAPF 739
            + LF  +Y       V+     F +DF++ WSD H+ Q++GGR  QL LD +SGCGFASK+QYLFGRVSMKIKL+PGDSAGTVTAFYMNS+T++VRDELDFEFLGN++GQPYTVQTN++A+GKGDREQRVNLWFDP+ D+H Y I WNH  IVFYVD+VPIRVYKN  + K P+P   P GVYSTLW ADDW T   + +    +APF
Sbjct:   17 LCLFAALY-----QPVMSRPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPF 219          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.819e-57
Identity = 107/189 (56.61%), Postives = 134/189 (70.90%), Query Frame = 2
Query:  185 VTFLEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGK--APFPMNNPWGVYSTLWGADDWGTEVVL-RNRLEKAPFL 742
            V F  ++  TW+  H++ L GG    LVLD+ +G GF SK  YLFG  SM IK+V GDSAGTVTAFY++S      DE+DFEFLGN+TGQPY +QTN++  G G+REQR+NLWFDP+ DYH Y++LWN + IVF+VDDVPIRV+KNS      FP N P  +YS+LW ADDW T   L +   EKAPF+
Sbjct:   30 VPFGRNYFPTWAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSE-HDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFV 217          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.809e-57
Identity = 108/189 (57.14%), Postives = 132/189 (69.84%), Query Frame = 2
Query:  185 VTFLEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGK--APFPMNNPWGVYSTLWGADDWGTEVVL-RNRLEKAPFL 742
            V F  ++  TW+  H++ L GG   QL LD+ +G GF SK  YLFG  SM IKLVPGDSAGTVTAFY++S T    DE+DFEFLGN+TGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN + IVFYVDD PIRV+KNS      FP N P  +Y++LW ADDW T   L +    KAPF+
Sbjct:   29 VPFGRNYVPTWAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSS-TNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFI 216          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.387e-56
Identity = 107/192 (55.73%), Postives = 133/192 (69.27%), Query Frame = 2
Query:  185 VTFLEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGK--APFPMNNPWGVYSTLWGADDWGTEVVLRNRLEK-----APF 739
            V F ++++ +W+  H++ L GG    LVLD++SG GF SK+ YLFG  SMK+KLV GDSAG VTAFY++SN     DE+DFEFLGN+TGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN   IV +VDDVPIR +KNS      FP N P  +YS+LW ADDW T    R  LEK     APF
Sbjct:   30 VPFWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWAT----RGGLEKTDWSNAPF 216          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.547e-55
Identity = 108/212 (50.94%), Postives = 142/212 (66.98%), Query Frame = 2
Query:  125 IXLFVLIYCXVXXSXVLGXXVTFLEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGK--APFPMNNPWGVYSTLWGADDWGTEVVLRNRLEK-----APF 739
            I L ++++C      V    V F ++++ +W+  H++ L GG    L+LD++SG GF SK+ YLFG  SMK++LV GDSAG VTAFY++SN     DE+DFEFLGN+TGQPY +QTN++  GKG+REQR+ LWFDP   YH Y++LWN + IV +VDDVPIR +KNS      FP N P  +YS+LW ADDW T    R  LEK     APF
Sbjct:   14 INLSLVVFCGYPRRPV---DVPFWKNYEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWAT----RGGLEKTNWANAPF 217          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.501e-55
Identity = 104/189 (55.03%), Postives = 132/189 (69.84%), Query Frame = 2
Query:  185 VTFLEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGK--APFPMNNPWGVYSTLWGADDWGTEVVL-RNRLEKAPFL 742
            V F  ++  TW+  H++   GG   QL LD+ +G GF SK  YLFG  SM IK+VPGDSAGTVTAFY++S      DE+DFEFLGN+TGQPY +QTN++  GKGDREQR+ LWFDP  +YH Y+ILWN + IVF+VD+VPIRV+KNS      FP + P  +Y++LW ADDW T   L +    KAPF+
Sbjct:   31 VQFGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFI 218          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 103/192 (53.65%), Postives = 131/192 (68.23%), Query Frame = 2
Query:  188 TFLEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTEN--VRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGKAP----FPMNNPWGVYSTLWGADDWGTEVVL-RNRLEKAPFL 742
            +F ++F + WS+ H    + G    L LD ++GCGF +K  Y FG  SMK+KLV GDSAG VTA+YM S       RDE+DFEFLGN+TGQPY +QTN+Y NG G+RE R +LWFDP  DYH Y+ILWN+H +VF+VD VPIRVYKNS K P    FP   P  ++S++W ADDW T   L +   +KAPF+
Sbjct:   24 SFEDNFNIMWSENHFTTSDDGEIWNLSLDNDTGCGFQTKHMYRFGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGNREMRHSLWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKNSDKVPNNDFFPNQKPMYLFSSIWNADDWATRGGLEKTDWKKAPFV 215          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.489e-54
Identity = 101/189 (53.44%), Postives = 131/189 (69.31%), Query Frame = 2
Query:  185 VTFLEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGK--APFPMNNPWGVYSTLWGADDWGTEVVL-RNRLEKAPFL 742
            V F +++  TW+  H+  + GGR  QL LD+ +G GF ++  YLFG  SM IKLV GDSAGTVTAFY++S      DE+DFEFLGN+TGQPY +QTN+++ GKGDREQR+ LWFDP  DYH Y++LWN + I F+VDD PIRV+KNS      +P + P  +YS+LW ADDW T     +    KAPF+
Sbjct:   30 VPFDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSE-HDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFV 217          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.226e-53
Identity = 104/193 (53.89%), Postives = 133/193 (68.91%), Query Frame = 2
Query:  185 VTFLEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGK--APFPMNNPWGVYSTLWGADDWGTEVVLRNRLEK-----APFL 742
            V F  ++  TW+  H +QL GG   QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY++S T N  DE+DFEFLGN+TGQP  +QTN++  GKG+REQR+ LWFDP+  YH Y++LWN + IVF+VD++PIRV+KN+      FP N P  +YS+LW ADDW T    R  LEK     APF+
Sbjct:   32 VPFGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSS-TNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWAT----RGGLEKTNWANAPFI 219          
The following BLAST results are available for this feature:
BLAST of EY659850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
XTH6_ARATH1.590e-7672.19Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH1.943e-7463.94Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH2.819e-5756.61Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN4.809e-5757.14Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_TOBAC2.387e-5655.73Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC1.547e-5550.94Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN4.501e-5555.03Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ARATH1.003e-5453.65Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT8.489e-5453.44Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB3.226e-5353.89Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659850 ID=EY659850; Name=EY659850; organism=Citrus sinensis; type=EST; length=852bp
TTCTTCANTATGGGGGGGGNNNGNANATAATTTCCTATGAGAGGGGAGNT
NTNTTTNTAATTAGTAANAGATAATATTTTATTGTATTGCTCCTCTTTAA
GATATGGNTATNNTAAGAAATGGAATAGNATTATTTGTGTTGATTTACTG
TNTTGTATNNTGNTCTTGNGTTTTAGGGNGANCGGTTACTTTTCTTGAGG
ATTTTAAAGTNACATGGTCCGATGCCCATCTCAGGCAATTGGAGGGAGGG
AGGNCCNTCCAGCTAGTTCTAGACCAAAATTCAGGATGTGGGTTTGCTTC
CAAAAGGCAGTACTTGTTCGGGCGTGTAAGCATGAAGATCAAGCTCGTTC
CTGGAGACTCTGCTGGAACTGTCACTGCATTTTATATGAATTCCAACACC
GAAAATGTGAGAGACGAGCTTGATTTTGAGTTCCTGGGAAACCAAACGGG
TCAGCCTTACACGGTCCAGACCAATATCTATGCAAATGGAAAAGGCGATA
GAGAACAGAGAGTGAACCTCTGGTTTGACCCTGCTGCAGATTATCACCTT
TACACTATTCTCTGGAACCATCACCATATTGTCTTCTATGTGGATGATGT
GCCCATCAGGGTTTACAAAAACAGTGGAAAGGCTCCATTTCCAATGAACA
ACCCATGGGGGGTGTATTCNACGCTGTGGGGAGCAGATGACTGGGGAACA
GAAGTGGTCTTGAGAAATAGATTGGAGAAAGCTCCTTTTTTGGTTATTAA
AGAGATTTGGTATTNNNNNNNGGCCAGTTCTGGGACAGAAAATTTGGCTT
GAACCCAGGTAATTGGGGGAAGCAAATTATTTTAAGCCTTACCGGCCTGG
GA
back to top