EY659840

Overview
NameEY659840
Unique NameEY659840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659840_ssr370 microsatellite EY659840_ssr370:370..381. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7808 contig Csv1_Contig7808:310..1147. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659840 vs. ExPASy Swiss-Prot
Match: FLA12_ARATH (Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.438e-29
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = 1
Query:   52 DSLFLKKEVALIQFHVIPTYVSLSEIQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLF 327
            +SL  +++V LIQFHVIP+YVS S  QT+SNPLRT AGDS+   +PLNVTT GN+VNI+SG+TNT+VSG VY+DGQLAVYQVDKVLLP  +F
Sbjct:   96 NSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLNVTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVF 187          
BLAST of EY659840 vs. ExPASy Swiss-Prot
Match: FLA11_ARATH (Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.052e-24
Identity = 52/101 (51.49%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   28 NSSNKEASDSLFLKKEVALIQFHVIPTYVSLSEIQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 330
            NS      +SL  +++V L+QFHV+PT +++ + QTVSNPLRT AGD    ++PLN+T+ GN VNI++G+ + +V+ +VY+D QLAVYQVD+VLLP  +FG
Sbjct:   86 NSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMFG 186          
BLAST of EY659840 vs. ExPASy Swiss-Prot
Match: FLA9_ARATH (Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana GN=FLA9 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.223e-12
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   73 EVALIQFHVIPTYVSLSEIQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 330
            +V LI +HV P Y S+ ++ +VSNP+RT A       Y LN T   N +N+S+G   T +S ++     LAVY VD VLLP ++FG
Sbjct:  103 QVKLILYHVSPKYYSMDDLLSVSNPVRTQASGRDNGVYGLNFTGQTNQINVSTGYVETRISNSLRQQRPLAVYVVDMVLLPGEMFG 188          
BLAST of EY659840 vs. ExPASy Swiss-Prot
Match: FLA6_ARATH (Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana GN=FLA6 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   19 PVRNSSNK---EASDSLFLKKEVALIQFHVIPTYVSLSEIQTVSNPLRTNAGDSSRFEYPLNVT--TFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 330
            P  N+ NK      +SL  ++++ L+ +H+IP Y SLS++   SNP+RT A       + LN T     N VN+S+G+  T ++  +     LAVY VD VLLP +LFG
Sbjct:   81 PTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDLLLASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSVLLPEELFG 189          
BLAST of EY659840 vs. ExPASy Swiss-Prot
Match: FLA13_ARATH (Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana GN=FLA13 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   73 EVALIQFHVIPTYVSLSEIQTVSNPLRTNA-GDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLFG 330
            +V LI +HV P + +L ++ +VSNP+RT A G      Y LN T  GN VN+S+G+  T +S ++  +  LAVY VD VLLP ++FG
Sbjct:  100 QVKLILYHVSPKFYTLEDLLSVSNPVRTQASGRDVGGVYGLNFTGQGNQVNVSTGVVETRLSTSLRQERPLAVYVVDMVLLPEEMFG 186          
The following BLAST results are available for this feature:
BLAST of EY659840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FLA12_ARATH1.438e-2969.57Fasciclin-like arabinogalactan protein 12 OS=Arabi... [more]
FLA11_ARATH4.052e-2451.49Fasciclin-like arabinogalactan protein 11 OS=Arabi... [more]
FLA9_ARATH1.223e-1243.02Fasciclin-like arabinogalactan protein 9 OS=Arabid... [more]
FLA6_ARATH2.086e-1238.53Fasciclin-like arabinogalactan protein 6 OS=Arabid... [more]
FLA13_ARATH4.647e-1244.83Fasciclin-like arabinogalactan protein 13 OS=Arabi... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659840 ID=EY659840; Name=EY659840; organism=Citrus sinensis; type=EST; length=838bp
CATTGGTCGCCTGATATACCGGTCCGGAATTCTTCAAACAAGGAGGCGTC
CGACTCCCTATTTCTAAAAAAAGAGGTTGCCCTAATCCAGTTCCACGTAA
TCCCCACTTACGTTTCATTATCCGAGATACAAACTGTAAGCAATCCCTTG
AGAACAAATGCTGGGGACAGCAGCAGATTCGAGTATCCACTCAATGTGAC
TACTTTTGGCAATTCAGTGAACATATCATCAGGCATTACCAACACAAGCG
TGTCTGGTACTGTGTACACCGATGGGCAACTTGCTGTTTATCAAGTGGAT
AAAGTGCTACTTCCTTGGGATCTTTTCGGAGCTAAGCCTCCGGCGCCGGC
GCCGGCACCGGAAAAACCTAAGAAGAAGAAGGCTGATGCGGTTGCTGACG
GTCCTGATGGTAAAGTGGATGACTCTAGTGCAATGAGTCTCATGAACAAT
ATAAAAAATGCGGTGGTCTTTGCACATGCTATTGCTGCAGTGATATTTTT
GTTGTGACAGCAGGAAATAATTCTGATGAGTTATATACATGATGGACGGT
TTGTATGATTTTTAAATCGAACGGTGGTGATCGACAATAGATAAGGCGAC
ATGGTGAGTGGTTTCCAATAATTTTGTCCTTTTCTTTTCTGTCCCATTTG
TATGATAATTTCTCTTTGTTTGTGATCTGCTGTTAAGATTTTATTTTGAG
GGTGTCTTTATCTCCTTTTTGCTATCCTTTTTTATTTTCCCCAATTCTAT
GTAATTTGCGAATTGTTTTAATTCTATTTAGAATCGATTATGTGTCATTG
GACTTTGGTCNNNNNCCTGAATGNNNAATGGGACACTN
back to top