EY659776

Overview
NameEY659776
Unique NameEY659776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3369 contig Csv1_Contig3369:194..1112. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659776 vs. ExPASy Swiss-Prot
Match: UBP24_ARATH (Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 3.525e-16
Identity = 59/191 (30.89%), Postives = 85/191 (44.50%), Query Frame = 3
Query:  192 MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDL-----GAVGCPK---ENGHIKN-STNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPIXKFHVLCDGNIDGRDQNAAACNSSISGSK 737
            MS+ K+FVFGSFTE ETRS+ +       +KP    +  K      +QFGSLN   E+S V T  E   K   DG V    S       +  S   +ND D       ++  P+   +NG IK  S +  +L+NGV  +K D I   +   + G      P+ K        +D  D ++ + + SI   K
Sbjct:    1 MSEKKVFVFGSFTEHETRSFFE-------QKPTKDPQNSKDKCVGSIQFGSLNLAAENSSVNTNGELK-KGEADGTVKSAGSQERLDASRPASSDKNNDSDAKLPRKNSLRVPEHVVQNGIIKEISESNKSLNNGV-AVKTDPIGLDNLSMSDG---ESDPVYKASSSKFQALDNEDFSSDSSSGSIQRKK 179          

HSP 2 Score: 45.8246 bits (107), Expect = 3.525e-16
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 1
Query:  823 FPYATLQALMSCSPFVQLLQELKTLDIPRLDT 918
            F  ATLQAL+SCSPFVQLLQ+++  DIP+ D+
Sbjct:  207 FLNATLQALLSCSPFVQLLQKIQLQDIPKADS 238          
The following BLAST results are available for this feature:
BLAST of EY659776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBP24_ARATH3.525e-1630.89Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-H11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659776 ID=EY659776; Name=EY659776; organism=Citrus sinensis; type=EST; length=918bp
CACGCGTCCGGTCTTCATCTACAACAACGCCTCTCTCTGTGTCTCTTCAG
GGTGTTCTCAAACCCTAGGTCGTTTTGCTTTTGATTTATTCTCTATACCT
GTCGTTTTATTTGCTTTCTCTGATATTTGTCAAAGTTTAAGATTTTGTTC
AAGGTCTCTGGGTGGTTCTAGGGTTCTGTCTCGTTCCGAATATGAGTGAT
TCTAAGTTATTTGTTTTTGGGTCATTTACCGAAGAGGAAACCAGGTCATG
GCTGCAAAGCCAATCATCTGGGAGTGTGAAAAAGCCTGTTTCATCTCGGA
GAGCTGAAAAACCTGCTGAAGATAAAGAGTTGCAGTTCGGTTCATTGAAT
TTTGGAACTGAAAGTTCTTTGGTTGGTACAACTGATGAACCGAATGGAAA
GTCGGTTGTTGATGGGCCAGTTGTTTTTCAGCCCTCAACCTTGCTTAAGA
AGGATGATAAAGTGAAGAGTGTAGGAGCATCGAATGATCATGACTTGGGA
GCCGTAGGATGTCCAAAGGAAAACGGACACATTAAGAATTCTACTAATGG
CCCTGCCCTCAGTAATGGTGTGAATCATTTGAAAGCAGATGGTATTGATT
TTAGTTCGTTTCACCAGAATGCAGGAGGCCATGCAAATCCTTCCCCAATT
TNCAAATTTCATGTCCTTTGTGATGGAAATATTGATGGCAGGGATCAGAA
TGCGGCTGCCTGCAACTCATCAATATCTGGTTCTAAAGAGTGCCCATGAA
GGCAATTAATGAGCCTGTTAAGTCTGTTAAAGACTTACTACCACGAGGCC
AANTCAACTCCGGGAATTTATGTTTCCTTATGCCACTCTTCAAGCTCTGA
TGTCCTGTTCCCCTTTTGTTCAGCTGTTGCAAGAACTTAAAACTCTTGAC
ATCCCCAGGCTGGATACC
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