EY659747

Overview
NameEY659747
Unique NameEY659747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659747_ssr457 microsatellite EY659747_ssr457:457..468. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12082 contig Csv1_Contig12082:60..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659747 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.085e-51
Identity = 121/263 (46.01%), Postives = 151/263 (57.41%), Query Frame = 1
Query:   37 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNXXXXXXXXXXXXXV--ATLPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPYELRSRSRPGKKEDKKAATG--TSR-----GGIRTLADLNRTPPGGAXXXXXXXEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSSAP----APPPENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEA 786
            E N +LINSF+EITSS+++EA FFLESH WNLDAAVSTFLDN                ++  A                                   PY LRSR   G+ ++ +  +G  +SR     G IRT ADLNR+P  G        E  +YYTGG+KSGM+VQDP K   VDE+F+QARQSAV+RP   + S+S +FTG ARLLSGE VSS+P       P+ + H ITFW NGFTV+DGPLRG  DP NA+F+ +
Sbjct:    4 ETNENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEPNPTGPPPPSSTIAGAQSPSQSHSPDYTPSETSPSPSRSRSASPSSRAAPYGLRSRGGAGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSD--EANEYYTGGQKSGMMVQDPKKVKDVDELFDQARQSAVDRPVEPSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNS 264          
BLAST of EY659747 vs. ExPASy Swiss-Prot
Match: NSF1C_DICDI (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.793e-14
Identity = 58/168 (34.52%), Postives = 79/168 (47.02%), Query Frame = 1
Query:  346 SRP-GKKEDKKAATGTSRGGIRTLADLNRTPPGGAXXXXXXXEP----QQYYTGGEKSGMLVQDPTK-------GNQVDEIFNQAR--------QSAVERPDLRASSSSKAFTGTARLLSGETVSSAPAPPPEN--VSHNITFWRNGFTVDDGPLRGMDDPANASFLE 783
            S+P  K   KKA  G   GGIRTL+D N              +     QQY+TGGEKSG++V+   K       G+ V+++F+ A+        +  VE+PD   S  S  +   A       VS      P +  V   +TFW  GFT+DDGPLR  D+P N   L+
Sbjct:   81 SKPVAKTVSKKAPAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVNDVFDSAKRHGAVASNEKKVEKPD---SFDSVGYQLGATDQGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPLRKYDNPENKELLD 245          
BLAST of EY659747 vs. ExPASy Swiss-Prot
Match: UBX1_EMENI (UBX domain-containing protein 1 OS=Emericella nidulans GN=ubx1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  469 EPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSS-------APAPP--PENVSHNITFWRNGFTVDDGPLRGMDDPANASFLEA 786
            E Q ++ GGEKSG+ VQ+P    +  +I  +AR++ +   D  +      FTG AR L GE   S        PA P  P  V   + FW +GF+VDDG L   DDP NA  L +
Sbjct:  102 ENQDFFAGGEKSGLAVQNPDDLKK--KIIEKARRTQLPASD-DSEPRRNYFTGPARTLGGEDTPSRVIDTPSGPAQPQIPRRVRRTLHFWADGFSVDDGELYRSDDPQNAEILNS 213          
The following BLAST results are available for this feature:
BLAST of EY659747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UBAX1_ARATH4.085e-5146.01UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_DICDI1.793e-1434.52NSFL1 cofactor p47 homolog OS=Dictyostelium discoi... [more]
UBX1_EMENI3.164e-1138.26UBX domain-containing protein 1 OS=Emericella nidu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659747 ID=EY659747; Name=EY659747; organism=Citrus sinensis; type=EST; length=867bp
CCACGCGTCCGCGGATCATTGCAGAAACCAACAGCAGAAGCTAACTCTTC
TTTAATCAATTCTTTCGTGGAGATCACATCATCCACCAAAGACGAAGCTC
TCTTCTTCTTGGAGTCTCATCAGTGGAATCTAGACGCCGCCGTTTCGACT
TTTCTAGACAACGCCGCAGCTGCCACTGCCTCCCCCGAAGCGTCTCAATC
GGTCGCTACTCTCCCTGCCGTTAACTCCCCATCGCTTTCAAACTCCCCCT
CGACCTCTCCGTCTGCGTCTTTGTCTCGTTCCCCGTCCCGGTCTCGGTCG
CCATCACCTGCTGCGGCTCGCGATCCGTACGAGCTGCGTTCCCGAAGCCG
ACCGGGGAAGAAGGAGGATAAGAAGGCGGCGACTGGGACATCACGTGGGG
GCATTCGGACTCTTGCTGATCTGAATAGGACTCCTCCTGGTGGGGCCGAT
AGCGATGACGACGACGACGAGCCGCAGCAGTATTATACTGGTGGTGAGAA
GAGCGGGATGCTGGTCCAAGATCCTACCAAAGGAAATCAAGTGGATGAAA
TTTTCAATCAAGCTAGACAATCAGCTGTAGAAAGGCCTGACCTTCGAGCA
TCATCAAGCTCAAAAGCCTTCACTGGAACAGCAAGGTTACTCTCTGGAGA
GACAGTATCATCTGCTCCAGCTCCTCCGCCTGAAAATGTCTCACACAACA
TCACTTTTTGGAGGAATGGGTTCACTGTAGATGATGGTCCATTGCGGGGG
ATGGATGATCCTGCAAATGCTTCCTTTTTGGAAGCATCATGAGGTCCGAG
TGCCCAGGGAGCTTGAACAGCTGATAGGAAACTCGTGTGCATGGTGAACT
CATCAATAGCGAGAGGA
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