EY659670

Overview
NameEY659670
Unique NameEY659670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659670_ssr338 microsatellite EY659670_ssr338:338..347. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659670 vs. ExPASy Swiss-Prot
Match: CI085_HUMAN (Uncharacterized protein C9orf85 OS=Homo sapiens GN=C9orf85 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:    3 KDHIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCATEQNVCAKCCSRVDRVI 179
            K+ ++W+ +Y KYKPLS+P KC +C ++ V+ +YH +C  CA E  VCAKC  + D VI
Sbjct:   49 KEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIVI 107
[Close]
BLAST of EY659670 vs. ExPASy Swiss-Prot
Match: CI085_MOUSE (Uncharacterized protein C9orf85 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:    3 KDHIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCATEQNVCAKCCSRVDRVI 179
            K+ ++W+ +Y KYKPLS+P KC +C ++ V+ +YH +C  CA E  VCAKC  + + VI
Sbjct:   49 KEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEEIVI 107
The following BLAST results are available for this feature:
BLAST of EY659670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CI085_HUMAN1.420e-1147.46Uncharacterized protein C9orf85 OS=Homo sapiens GN... [more]
CI085_MOUSE4.133e-1145.76Uncharacterized protein C9orf85 homolog OS=Mus mus... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-G10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659670 ID=EY659670; Name=EY659670; organism=Citrus sinensis; type=EST; length=870bp
GTAAAGATCATATTGATTGGAAACGCCGTTATGGCAAATATAAACCTCTC
TCTGAGCCTGCCAAGTGTCAACGTTGTACCAAGCGTGCCGTACGTCAAGC
TTACCATAACCTCTGTCCTGGTTGTGCGACAGAACAAAATGTATGTGCAA
AGTGTTGTTCCCGCGTGGATCGTGTGATTGGAAGATACCTTGCAGAGGTA
AAGGCTGAACAAAAGATGCTTGAATCAGCTTGTATTCACTTGTCAACAAT
ATGATTGGCCTGTAAAATTAGAGTTCTTTCTTTTAACAATTAAACTGACG
GGTATATGGATTTTATTACAGGCACTAAAAAATGCTCGAGAGAGAGATCG
AAGAATTCTTCTACGTGCTCAAAAAATCCAGCCAACAAAAATAAAGTTGG
GGAATTATTTCCTTCCGCATCACTTGAGGAATATGCTGCGAAAAGCAGAG
GTGACAAATACACTAACATTGGTGATAACATGGATAAAATCAATGATGAA
CATGATGGCGTTGACTGCGAAACTGGAGTTACTGATCTTGATGACCATGA
TGATGATTATGTTGAAGATGCTGAACAAGTTTGTAATTGGTAGATGCCAT
ACTTCTTTCAAGCTGATTTTAGTATGCCGATGATCTCCTACCAATAACAG
TGGATATGCTGATCATTTTACTTTATTTAGGCCAGTGTGCATCTATAGGA
TATATCATACTTACTGGCAAGTCATATTAAATNCTGGTTCCCCTTGTGTA
TGTACCGATATCATGTGCGATTTGCTGTCATTTTTACAATGAAAGTTGTG
TAACCCAATGAACCTACATTTGTATTATAAAATATCTTGACGATCAGCAT
CCTCCTCTCAAAAAAAAGGC
back to top