EY659663

Overview
NameEY659663
Unique NameEY659663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659663 vs. ExPASy Swiss-Prot
Match: RNF10_XENLA (RING finger protein 10 OS=Xenopus laevis GN=rnf10 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.501e-17
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = 3
Query:  351 YNFYHAIDGQHLILHPLNVKCLLHHYGSYDMLPHRISGRILQLESVTQSEAMRRRYRYLSHFSLTQHFSFVRXXXXXXXXXXXXXXXXXKS-RKREKQRKQLANNERKDEMKAE 689
            Y FY A+DGQH+ LHP+NV+CL+H YGS +  P +I+  +++++  T +E +RRR+RYL H  LT  FS                    +   KR++ R++ A +E++ E + E
Sbjct:  465 YYFYQAVDGQHVYLHPVNVRCLVHEYGSLERCPEKITATVVEMDGFTMTEEVRRRHRYLCHLPLTCEFSICEIALGPPDVSVKTLELFTEEVEKRKRLRQRKARDEQRREKRIE 578          
BLAST of EY659663 vs. ExPASy Swiss-Prot
Match: RNF10_RAT (RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.501e-17
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  321 GSMEIKDKDSYNFYHAIDGQHLILHPLNVKCLLHHYGSYDMLPHRISGRILQLESVTQSEAMRRRYRYLSHFSLTQHFSFVRXXXXXXXXXXXXXXXXXKS-RKREKQRKQLANNERKDEMKAE 689
            G  ++     Y FY A DGQH+ LHP+NV+CL+  YGS +  P +IS  ++++   + SE +R+R+RYLSH  LT  FS                        KR++QR++ A  ER+ E + E
Sbjct:  488 GFTQLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKRKRQRQKKAREERRRERRIE 611          
BLAST of EY659663 vs. ExPASy Swiss-Prot
Match: RNF10_MOUSE (RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.501e-17
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  321 GSMEIKDKDSYNFYHAIDGQHLILHPLNVKCLLHHYGSYDMLPHRISGRILQLESVTQSEAMRRRYRYLSHFSLTQHFSFVRXXXXXXXXXXXXXXXXXKS-RKREKQRKQLANNERKDEMKAE 689
            G  ++     Y FY A DGQH+ LHP+NV+CL+  YGS +  P +IS  ++++   + SE +R+R+RYLSH  LT  FS                        KR++QR++ A  ER+ E + E
Sbjct:  489 GFTQLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKRKRQRQKKAREERRRERRIE 612          
BLAST of EY659663 vs. ExPASy Swiss-Prot
Match: RNF10_BOVIN (RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.501e-17
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  351 YNFYHAIDGQHLILHPLNVKCLLHHYGSYDMLPHRISGRILQLESVTQSEAMRRRYRYLSHFSLTQHFSFVRXXXXXXXXXXXXXXXXXKS-RKREKQRKQLANNERKDEMKAE 689
            Y FY A DGQH+ LHP+NV+CL+  YGS +  P +IS  ++++   + SE MR+R+RYLSH  LT  FS                        KR++QR++ A  ER+ E + E
Sbjct:  505 YYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISATVVEISGYSMSEDMRQRHRYLSHLPLTCEFSICELALQPPLVSKETLEIFSDDIEKRKRQRQKKAREERRRERRIE 618          
BLAST of EY659663 vs. ExPASy Swiss-Prot
Match: RNF10_HUMAN (RING finger protein 10 OS=Homo sapiens GN=RNF10 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.621e-16
Identity = 44/125 (35.20%), Postives = 66/125 (52.80%), Query Frame = 3
Query:  318 TGSMEIKDKDSYNFYHAIDGQHLILHPLNVKCLLHHYGSYDMLPHRISGRILQLESVTQSEAMRRRYRYLSHFSLTQHFSFVRXXXXXXXXXXXXXXXXXKS-RKREKQRKQLANNERKDEMKAE 689
            +G   +     Y FY A DGQH+ LHP+NV+CL+  YGS +  P +IS  ++++   + SE +R+R+RYLSH  LT  FS                        KR++QR++ A  ER+ E + E
Sbjct:  495 SGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKRKRQRQKKAREERRRERRIE 619          
The following BLAST results are available for this feature:
BLAST of EY659663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RNF10_XENLA9.501e-1735.96RING finger protein 10 OS=Xenopus laevis GN=rnf10 ... [more]
RNF10_RAT9.501e-1735.48RING finger protein 10 OS=Rattus norvegicus GN=Rnf... [more]
RNF10_MOUSE9.501e-1735.48RING finger protein 10 OS=Mus musculus GN=Rnf10 PE... [more]
RNF10_BOVIN9.501e-1738.60RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2... [more]
RNF10_HUMAN1.621e-1635.20RING finger protein 10 OS=Homo sapiens GN=RNF10 PE... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659663 ID=EY659663; Name=EY659663; organism=Citrus sinensis; type=EST; length=929bp
CGGATATCATCGAGCAAAACCANAAATTGACTAAGCTGACGTTGAATAAG
CCGGATAGTGGGTCTGCTCCTGGTCAAAATTCTGCTCTAGGGGAATTGTC
AGATTGCGATGAAACAAGTTTGTCTTCTTCATATGATGAAAGTAAGAGCA
TGCAAGCTAATGAAACGAGTTTGTCTTCATCATATGATGAAAGTAAGAGC
TTGCAAGCTAATGAAACGAGTTTGTCTTCGTCATATGATGAAAGTAAGAG
CATGCAAGCTAACGAAACAAGTTTGTCTTCTTCATATGATGAAAGTAAGA
GCTTGCAAGCTAACTTCACAGGCTCTATGGAGATAAAGGATAAGGACTCG
TACAATTTTTATCATGCCATTGACGGTCAGCATCTCATTCTTCACCCATT
GAACGTGAAGTGTCTTCTACATCATTATGGGAGCTATGATATGCTTCCCC
ACAGAATAAGCGGAAGGATTTTACAGCTGGAGTCAGTGACTCAATCAGAG
GCCATGAGGCGGCGCTATCGTTATTTAAGTCATTTCTCTTTAACACAACA
TTTCAGCTTTGTGAGATTGATTTGACTGATGCCCTGCCTCCTGATGCCCT
ATCTCCCTTCATAGATGAAATCCCGGAAGCGTGAGAAGCAGAGGAAGCAA
CTCGCCAACAATGAGCGGAAGGATGAAATGAAAGCTGAAGCTGTTCTATT
GCTTTCTGTGCCCTCCGGGCCCAACTTTGAACAGTCCTTCTTCAATGACT
CCCCTACATTTTTCATGGATGAATTTTGAGCCCTGGGAAATCTTCCTGGG
ACATCATCAAGCCCCCAAATGTTGGGGGAGCGAAACTGGGTCTCAATGGG
ACAGACACTGGGTTGCTGCGGGGCCTAATCACCTGCCTTGTAATGAGGAA
CCCATGCCTTGATAACATGAACAACCAAT
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