EY659651

Overview
NameEY659651
Unique NameEY659651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659651_ssr640 microsatellite EY659651_ssr640:640..651. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659651 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.478e-46
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 1
Query:  133 MARSLFKAKLLLAPVADGISLSINRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAQLQEMLLNHKVTAH 423
            MARSLFKAKLLLAPVADGISLSI+RRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPA+L+EMLLNHKV AH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of EY659651 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.376e-20
Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = 1
Query:  133 MARSLFKAKLLLAPVADGISLSINRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAQLQEMLLNHKV 414
            MARS+   KLL A + DG+ +SI+RRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+L+EMLLNH+V
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRV 102          
BLAST of EY659651 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.304e-18
Identity = 52/102 (50.98%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  133 MARSLFKAKLLLAPVADGISLSINRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAQLQEMLLNHKV 414
            MARS+   K L A V D + +SI+RRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A L+EM+LNH+V
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRV 102          
The following BLAST results are available for this feature:
BLAST of EY659651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI1.478e-4695.88Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.376e-2052.94Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.304e-1850.98Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-E12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659651 ID=EY659651; Name=EY659651; organism=Citrus sinensis; type=EST; length=912bp
AAGAGACGAGCCGCTAGCTTTTGCCTATAGCTACTGCAGGAGCAGAATCT
TTCTTCTTCTGTAGTACCACTGTACAAAAACATCCCAGCTAGCTATCTTC
ATATCTATTAAGGTCTATAAGTAAATAAAACAATGGCCCGCTCTCTCTTC
AAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGATGGCATCTCGCTCTCCAT
TAACAGGAGAGGATATGCTGCAGCAGCACCCTTGGGGACCATATCTCGGA
CTGGTATCATGGAGAAAAATGATTTGAGGCCTGCGGTGAGAGAGGATTCT
GGGGCCTCTTCTGCCTGGGCCCCAGATCCCATCACTGGGTACTACAGGCC
GGAGAATCGGGCGGTCGAGATTGATCCAGCACAGCTTCAAGAGATGCTGT
TGAACCACAAAGTCACGGCACACTAAGGAGTGGTGGCGCATAACAGCAGA
TCCTTTGCTGTTAGCGGTGCTGTAACTTTATAAGTGATGTTGGTACAGTA
GCAATTCTGACTCACTCTTAAGGCTCTGCTGTTGTATTGATATCAACTGT
TATTGACAACTGTTGATAGTGCATGTCCATGATTCTGTCTATTAACTCGT
CAATAAAAGTAAAGAATTCCTGTATTGCAAAATTACTTTTATATATATAT
AGAAGGGTTATGCGCGTCTGGGATCCCAGACTGATATTAAGTCCAGGATT
GCGACCATGTGTCTCAGATTACTAAATAATGAATAATCCGACGGCCTCAG
TCCGATACTAGTTTGGATAACATAGATTTTGCTGGATTGAGCTGATGTTG
GTGCCCTTGAAACAGGNTTTAGGGCGGCCGTTTTGAGATCCAATTTACTC
CGCGGGCGGCGAGGAATGGTTTTTTTGGGGGCCCTAATCAATAACGGCCG
GCGTTTAAACGG
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