EY659625

Overview
NameEY659625
Unique NameEY659625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length966
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659625 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 4.338e-52
Identity = 103/184 (55.98%), Postives = 127/184 (69.02%), Query Frame = 2
Query:  149 MACILADSMFLFMGPHQRPTGSQKIGCFNSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQXXXXXXXXXS*YSADCRKQIAQSYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLARAWTGTAVTGLFVISHDCAHKSLSKNKVLRDIRGT 700
            MAC LADS+ LF G +Q+P   + I    SPG+  L    L+ K  + +R  +       I             SA+ RKQ+A+ YGFRQ+GEPL ++VT+KDVI+ LPK+VFEIDDVKAWKSVL+SV+SYALGL MISKAPWYLLPLA  WTGTA+TG FVI HDCAH+S S NK++ DI GT
Sbjct:    1 MACTLADSLLLFKGSYQKPVLRRDIAARYSPGIFSLNSNGLIQKRFRRQRNFVTRNKVTVIHAVAIPVQPAPVESAEYRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGT 184          
BLAST of EY659625 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 9.046e-50
Identity = 103/185 (55.68%), Postives = 132/185 (71.35%), Query Frame = 2
Query:  149 MACILADSMFLFMGPHQRPTGSQKIGCFN-SPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQXXXXXXXXXS*YSADCRKQIAQSYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLARAWTGTAVTGLFVISHDCAHKSLSKNKVLRDIRGT 700
            MA  +ADS+F F GP Q    + K+     SPG+  ++   LL+KG +        +    I+         S  +A+ R+Q+A+SYGF+QIG+ LP+NVT+KD++D+LPK+VFEIDDVKAWKSVL+SV+SYALGL MI+KAPWYLLPLA AWTGTAVTG FVI HDCAHKS SKNK++ DI GT
Sbjct:    1 MASRIADSLFAFTGPQQCLPRAPKLASARLSPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVFVPVAPPSADNAEDREQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMIAKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGT 185          
BLAST of EY659625 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 1.181e-49
Identity = 108/190 (56.84%), Postives = 134/190 (70.53%), Query Frame = 2
Query:  149 MACILADSMFLFMGPHQRPTGSQKIGCFN---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQXXXXXXXXXS*YSADCRKQIAQSYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLARAWTGTAVTGLFVISHDCAHKSLSKNKVLRDIRGT 700
            MA  +ADS+F F GP Q      K+   +   SPG+  +K   LL+KG  H+  RC  P  R    I+         S  SA+ R+Q+A+SYGFRQIGE LPENVT+KD++D+LPK+VFEIDD+KA KSVL+SV+SY LGL MI+K+PWYLLPLA AWTGTA+TG FVI HDCAHKS SKNK++ DI GT
Sbjct:    1 MASRIADSLFAFTGPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAPVAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMIAKSPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGT 190          
BLAST of EY659625 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.329e-44
Identity = 89/164 (54.27%), Postives = 118/164 (71.95%), Query Frame = 2
Query:  233 NSPGLCQLKWESLLVKGVKHKRCSIPSRGTR----FIQXXXXXXXXXS*Y----SADCRKQIAQSYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLARAWTGTAVTGLFVISHDCAHKSLSKNKVLRDIRGT 700
            NS G+  +KW+   ++ + H R +   +GTR     +Q         S +    + +  KQ+A+ YGF+QIGEPLP++VTM+D+I SLPK+VFEI+D KAW +VL+SV+SYALG+ MI+KAPWYLLPLA AWTGTA+TG FVI HDCAHKS SKNK++ DI GT
Sbjct:   27 NSAGISCIKWQRPCLRNLGHVRLNQQRKGTRRKSTLVQAVAVPVAQPSAFPPTDNTEHLKQLAERYGFQQIGEPLPDDVTMRDIITSLPKQVFEINDTKAWGTVLISVTSYALGIFMIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGT 190          
BLAST of EY659625 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.162e-18
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  452 KDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLARAWTGTAVTGLFVISHDCAHKSLSKNKVLRD 688
            +D+I++LP  VF  D  KAW +V+++V    LG L I+ APW+LLP+   +TGTA+TG FVI HDC H+S S+N  + D
Sbjct:   26 EDIINTLPSGVFVQDRYKAWMTVIINVVMVGLGWLGIAIAPWFLLPVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVND 104          

HSP 2 Score: 27.7202 bits (60), Expect = 4.162e-18
Identity = 17/60 (28.33%), Postives = 24/60 (40.00%), Query Frame = 3
Query:  750 HD*HHAKTNMPDRDTAWPSCWKEELTHLPSWRNHYIWIWPLSTW--DGLAHWLIWPFDST 923
            H+ HH  TN  + D AW    KEE  +   +      ++    W    + HW    FD T
Sbjct:  125 HNQHHKYTNRMELDNAWQPWRKEEYQNAGKFMQVTYDLFRGRAWWIGSILHWASIHFDWT 184          
BLAST of EY659625 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.557e-17
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 2
Query:  440 NVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLARAWTGTAVTGLFVISHDCAHKSLSKNKVLRDIRG 697
            ++ ++D+I +LPK+ FE    KAW SVL+++ + A+G L I   PWY LP+   WTGTA+TG FV+ HDC H+S +K + + D+ G
Sbjct:   23 DLKLQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYLGIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVG 108          
The following BLAST results are available for this feature:
BLAST of EY659625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FAD6C_SOYBN4.338e-5255.98Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_BRANA9.046e-5055.68Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_ARATH1.181e-4956.84Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_SPIOL3.329e-4454.27Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
DESA_SPIPL4.162e-1849.37Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
DESA_SYNY31.557e-1745.35Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-C08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659625 ID=EY659625; Name=EY659625; organism=Citrus sinensis; type=EST; length=966bp
TTCGGTGCCGGAATTACCGCCTCGACCCACGCGTCCGAGAAATTTTATCC
ATCCACTTTTTTCACATTCACTCAATCCCAATATATATCCAAGTGGGAAG
GGGGCTCTTGTGAATTGGAATTTCTGCATTTCTCTTGCTCAAAACATAAT
GGCTTGCATACTTGCAGATTCTATGTTCCTTTTCATGGGCCCCCATCAAA
GGCCAACTGGGAGTCAAAAAATTGGATGCTTTAATTCACCTGGCCTTTGT
CAGCTGAAGTGGGAGAGTCTTCTTGTGAAGGGAGTTAAGCACAAAAGATG
TTCAATTCCCTCTCGAGGGACTAGATTTATACAGGCTGTGGCCGTTCCAG
TTGCACCACCTTCATAATACAGTGCGGATTGTAGAAAGCAGATAGCACAA
AGTTATGGGTTTAGGCAAATCGGAGAGCCACTGCCTGAAAATGTGACAAT
GAAGGATGTCATTGATTCTCTCCCAAAAAAGGTATTTGAGATTGATGATG
TGAAAGCATGGAAGTCTGTTCTATTATCCGTCAGTTCATATGCGTTGGGG
CTTCTCATGATCTCAAAGGCCCCATGGTATTTGCTTCCTTTGGCTAGGGC
ATGGACAGGGACTGCGGTCACAGGGCTCTTTGTTATAAGCCATGATTGTG
CCCACAAATCACTTTCGAAGAACAAGGTACTGCGAGACATCCGAGGCACC
CCTGGCCTTTCTGCCACTGATATACCCATATGAACCCCTGCCGCTTAAGC
ACGACTAGCATCATGCCAAAACAAACATGCCTGACCGAGATACAGCTTGG
CCATCCTGTTGGAAAGAGGAGTTAACACATCTCCCTTCGTGGCGCAACCA
TTATATATGGATATGGCCCCTTTCGACCTGGGATGGATTAGCTCACTGGT
TGATCTGGCCCTTTGATTCGACCAGTTCCGCCAAATGAGTTAAACGGTGA
AAATAATTGGCCTGGG
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