EY659604

Overview
NameEY659604
Unique NameEY659604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659604_ssr247 microsatellite EY659604_ssr247:247..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_ARATH (Actin-related protein 3 OS=Arabidopsis thaliana GN=ARP3 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 5.991e-77
Identity = 129/146 (88.36%), Postives = 138/146 (94.52%), Query Frame = 1
Query:  286 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            MDPTSRPA+VIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQS+SSSKA W  Q+NAGV ADLDF+IGDEA+ KSRSSST+NL YPI HGQV++WDAMERYWQQCIFNYLRCDPEDHYFLLTESPLT PESREYTGEI+FETF
Sbjct:    1 MDPTSRPAIVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSKSSSKATWQTQHNAGVAADLDFYIGDEALAKSRSSSTHNLHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTPPESREYTGEILFETF 146          

HSP 2 Score: 31.187 bits (69), Expect = 5.991e-77
Identity = 15/19 (78.95%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  720 FYVPGXYIAVNSVLALQLG 776
            F VPG YIAVNSVLAL  G
Sbjct:  146 FNVPGLYIAVNSVLALAAG 164          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSJ (Actin-related protein 3 OS=Oryza sativa subsp. japonica GN=ARP3 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 7.096e-69
Identity = 118/147 (80.27%), Postives = 136/147 (92.52%), Query Frame = 1
Query:  286 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSS-KANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            MD  SRPAVVIDNGTGYTKMGFAGNVEPCFI PTVVAVN++F  Q+R+++ K NW+AQ++AGVMADLDFFIG++A+ +SRSS+TYNLSYPI +GQV+NWD MER+WQQCIFNYLRCDPEDHYFLLTESPLT PE+REYTGEIMFETF
Sbjct:    1 MDAASRPAVVIDNGTGYTKMGFAGNVEPCFITPTVVAVNDTFAGQTRANTTKGNWMAQHSAGVMADLDFFIGEDALARSRSSNTYNLSYPIHNGQVENWDTMERFWQQCIFNYLRCDPEDHYFLLTESPLTPPETREYTGEIMFETF 147          

HSP 2 Score: 25.0238 bits (53), Expect = 7.096e-69
Identity = 12/19 (63.16%), Postives = 12/19 (63.16%), Query Frame = 3
Query:  720 FYVPGXYIAVNSVLALQLG 776
            F VPG YIA   VLAL  G
Sbjct:  147 FNVPGLYIACQPVLALAAG 165          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSI (Actin-related protein 3 OS=Oryza sativa subsp. indica GN=ARP3 PE=2 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 7.096e-69
Identity = 118/147 (80.27%), Postives = 136/147 (92.52%), Query Frame = 1
Query:  286 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSS-KANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            MD  SRPAVVIDNGTGYTKMGFAGNVEPCFI PTVVAVN++F  Q+R+++ K NW+AQ++AGVMADLDFFIG++A+ +SRSS+TYNLSYPI +GQV+NWD MER+WQQCIFNYLRCDPEDHYFLLTESPLT PE+REYTGEIMFETF
Sbjct:    1 MDAASRPAVVIDNGTGYTKMGFAGNVEPCFITPTVVAVNDTFAGQTRANTTKGNWMAQHSAGVMADLDFFIGEDALARSRSSNTYNLSYPIHNGQVENWDTMERFWQQCIFNYLRCDPEDHYFLLTESPLTPPETREYTGEIMFETF 147          

HSP 2 Score: 25.0238 bits (53), Expect = 7.096e-69
Identity = 12/19 (63.16%), Postives = 12/19 (63.16%), Query Frame = 3
Query:  720 FYVPGXYIAVNSVLALQLG 776
            F VPG YIA   VLAL  G
Sbjct:  147 FNVPGLYIACQPVLALAAG 165          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_DICDI (Actin-related protein 3 OS=Dictyostelium discoideum GN=arpC PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.715e-46
Identity = 85/147 (57.82%), Postives = 108/147 (73.47%), Query Frame = 1
Query:  286 MDPTSR-PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            M+P S  PAVVIDNGTGYTKMG+AGN +P FI+PT +A   S   Q+ +S K           + DLDFFIGDEA+  S+   TY+++ P++HGQ++NW  ME+YW+ C+F YLRC+PEDHYFLLTE PL APE+RE+T EIMFETF
Sbjct:    1 MNPASGLPAVVIDNGTGYTKMGYAGNNDPSFIIPTTIATQSSKGKQTAASQKKG---------VEDLDFFIGDEAIANSK---TYDMTNPVKHGQIENWTHMEQYWEHCVFKYLRCEPEDHYFLLTEPPLNAPENREFTAEIMFETF 135          

HSP 2 Score: 26.1794 bits (56), Expect = 7.715e-46
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  135 FNVPGLYIAVQAVLAL 150          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_CAEEL (Actin-related protein 3 OS=Caenorhabditis elegans GN=arx-1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.418e-45
Identity = 84/140 (60.00%), Postives = 105/140 (75.00%), Query Frame = 1
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PA VIDNGTGYTK+G+AGN EP FI+P+ +AV +     S +S    W  +  AG+  DLDFFIGDEA+  S +++ Y + YPIRHG V++WD MERYW+QCIF YLR +PEDH+FLLTE PL  PE+REYT EIMFE+F
Sbjct:    7 PACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVA--SSNSQAMRWNNRVGAGI-DDLDFFIGDEAL--SPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESF 141          

HSP 2 Score: 26.1794 bits (56), Expect = 6.418e-45
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  141 FNVPGLYIAVQAVLAL 156          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_ACACA (Actin-related protein 3 OS=Acanthamoeba castellanii GN=ARP3 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.090e-44
Identity = 83/146 (56.85%), Postives = 103/146 (70.55%), Query Frame = 1
Query:  286 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            M  +  PAVVIDNGTGYTKMG+AGN EP +I+PT +A  +      R  ++  W        +ADLDFFIGDEA   S+    Y ++ P+RHGQV+NW  ME++W+ CIF YLRC+PEDH+FLLTE PL APE+REYT EIMFETF
Sbjct:    1 MSRSGLPAVVIDNGTGYTKMGYAGNTEPQYIIPTAIAT-KGIAEDPRCRARRWWCPWAAGKNIADLDFFIGDEAYENSK---VYQITMPVRHGQVENWTHMEQFWEHCIFKYLRCEPEDHHFLLTEPPLNAPENREYTAEIMFETF 142          

HSP 2 Score: 26.1794 bits (56), Expect = 1.090e-44
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  142 FNVPGLYIAVQAVLAL 157          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_CAEBR (Actin-related protein 3 OS=Caenorhabditis briggsae GN=arx-1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.420e-44
Identity = 82/140 (58.57%), Postives = 103/140 (73.57%), Query Frame = 1
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PA VIDNGTGYTK+G+AGN EP FI+P+ +AV +     S ++    W  +     + DLDFFIGDEA+  S ++S Y + YPIRHG V++WD MERYW+QCIF YLR +PEDH+FLLTE PL  PE+REYT EIMFE+F
Sbjct:    7 PACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVA--SSNAQALRWNNRVGGAGIDDLDFFIGDEAL--SPAASNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESF 142          

HSP 2 Score: 26.1794 bits (56), Expect = 1.420e-44
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  142 FNVPGLYIAVQAVLAL 157          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_SCHPO (Actin-related protein 3 OS=Schizosaccharomyces pombe GN=act2 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.774e-40
Identity = 77/145 (53.10%), Postives = 108/145 (74.48%), Query Frame = 1
Query:  310 VVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRS-SSKANWLAQYNAGVMA------DLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            +++DNGTGY+K+G+AGN  P ++ PTV+A   +  +   + SSK +++A   +G ++      DLDFFIG++A+ K+  S+ Y+L YPIRHGQ++NWD MER+WQQ +F YLRC+PEDHYFLLTE PL  PE+RE T EIMFE+F
Sbjct:    8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKA--SAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESF 150          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_DROME (Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 2.755e-39
Identity = 77/140 (55.00%), Postives = 99/140 (70.71%), Query Frame = 1
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PA VID GTGY+K+GFAGN EP FI+P+ +A+ ES      ++ +         G+  DLDFFIGDEA      ++ Y++ YP+RHG V++WD MER+ +QC+F YLR +PEDHYFLLTE PL  PE+REYT EIMFETF
Sbjct:    6 PACVIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRRIT------KGI-EDLDFFIGDEAF----DATGYSIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFETF 134          

HSP 2 Score: 26.1794 bits (56), Expect = 2.755e-39
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  134 FNVPGLYIAVQAVLAL 149          
BLAST of EY659604 vs. ExPASy Swiss-Prot
Match: ARP3_RAT (Actin-related protein 3 OS=Rattus norvegicus GN=Actr3 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.979e-38
Identity = 81/142 (57.04%), Postives = 98/142 (69.01%), Query Frame = 1
Query:  304 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA--GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF 723
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ ES        +K    AQ     GV  DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PEDHYFLLTE PL  PE+REYT EIMFE+F
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES--------AKVGDQAQRRVMKGV-DDLDFFIGDEAIEKP----TYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESF 134          

HSP 2 Score: 26.1794 bits (56), Expect = 2.979e-38
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  720 FYVPGXYIAVNSVLAL 767
            F VPG YIAV +VLAL
Sbjct:  134 FNVPGLYIAVQAVLAL 149          
The following BLAST results are available for this feature:
BLAST of EY659604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
ARP3_ARATH5.991e-7788.36Actin-related protein 3 OS=Arabidopsis thaliana GN... [more]
ARP3_ORYSJ7.096e-6980.27Actin-related protein 3 OS=Oryza sativa subsp. jap... [more]
ARP3_ORYSI7.096e-6980.27Actin-related protein 3 OS=Oryza sativa subsp. ind... [more]
ARP3_DICDI7.715e-4657.82Actin-related protein 3 OS=Dictyostelium discoideu... [more]
ARP3_CAEEL6.418e-4560.00Actin-related protein 3 OS=Caenorhabditis elegans ... [more]
ARP3_ACACA1.090e-4456.85Actin-related protein 3 OS=Acanthamoeba castellani... [more]
ARP3_CAEBR1.420e-4458.57Actin-related protein 3 OS=Caenorhabditis briggsae... [more]
ARP3_SCHPO2.774e-4053.10Actin-related protein 3 OS=Schizosaccharomyces pom... [more]
ARP3_DROME2.755e-3955.00Actin-related protein 3 OS=Drosophila melanogaster... [more]
ARP3_RAT2.979e-3857.04Actin-related protein 3 OS=Rattus norvegicus GN=Ac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-A07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659604 ID=EY659604; Name=EY659604; organism=Citrus sinensis; type=EST; length=935bp
CCACGCGTCCGGACAGTGATAGCAATGATGAAGAAGTTGATGAGCGAGGC
TTATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGT
ACCAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATT
CAAGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTC
CATTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCA
CCACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCT
CGTCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTT
TGCGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAA
ACGAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTT
GCACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGA
TGAAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATC
CTATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGG
CAGCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGGATCACTACTT
TCTGTTGACCGAGAGCCCGCTCACTGCTCCTGAGAGTAGAGAGTATACTG
GTGAGATCATGTTTGAGACTTTTATGTTCCTGGNNCTTATATTGCTGTGA
ATTCNGTGCTTGCACTGCAGCTGGGTACACACATCTAAATGTGAGAGACA
NGAGTTGTGTGGATGTTNGAATGGGGCTACTATGTAGTACAGTCCCAGAG
GGCTTGTCATGGGAGCACATTAGTCGATTCTATTGCTGAAAGATGCACTT
TTTCATCCCAGCTCTGCGGGAAAAGGGAAATATTC
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