EY659582

Overview
NameEY659582
Unique NameEY659582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659582_ssr29 microsatellite EY659582_ssr29:29..40. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659582_ssr62 microsatellite EY659582_ssr62:62..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659582 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.263e-22
Identity = 57/133 (42.86%), Postives = 76/133 (57.14%), Query Frame = 2
Query:  269 LTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTTSAVSTG 664
            + E+ V M C+ CVDAV + LQ V G+++VEV L NQ+V +  + P + +   LE TGR+A L G G      + AAVA   G   V GVVR  Q+  E   IE    GL PG HG  +++FGDLT +  S G
Sbjct:   13 MLEFAVQMTCQSCVDAVSRSLQGVAGIQSVEVQLENQMVLVQTTLPSQVVQALLEDTGRQAVLKGMGSGRWQNLEAAVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCG 145          

HSP 2 Score: 27.335 bits (59), Expect = 1.263e-22
Identity = 20/57 (35.09%), Postives = 26/57 (45.61%), Query Frame = 1
Query:  643 NKCSEHWQSYYPKIEG--SAKEPLGDPGNRIADEKR*ALFFRCKXMLKIADPIGRSL 807
            N C +H+        G   +    GD GN  AD    A+F     +LK+ D IGRSL
Sbjct:  142 NSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKVWDVIGRSL 198          
BLAST of EY659582 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.137e-22
Identity = 61/144 (42.36%), Postives = 84/144 (58.33%), Query Frame = 2
Query:  236 TSQGDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTTSAVSTG 664
            +  G+QG    L E+ V M C+ CVDAV++ LQ V GV++VEV L +Q+V +  + P + +   LE TGR+A L G G  +   + AAVA   GP  V GVVR  Q+  E   IE    GL PG HG  ++++GDLT +  S G
Sbjct:    3 SDSGNQGTLCTL-EFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCG 145          

HSP 2 Score: 25.7942 bits (55), Expect = 2.137e-22
Identity = 16/33 (48.48%), Postives = 18/33 (54.55%), Query Frame = 1
Query:  709 GDPGNRIADEKR*ALFFRCKXMLKIADPIGRSL 807
            GD GN  AD    A+F      LK+ D IGRSL
Sbjct:  166 GDLGNVRADADGRAIFRMEDEQLKVWDVIGRSL 198          
BLAST of EY659582 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.707e-22
Identity = 61/144 (42.36%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  236 TSQGDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTTSAVSTG 664
            +  GD G    L E+ V M C+ CVDAV + L+   GV+NVEV L NQ+V +  + P + +   LE TGR+A L G G  +   + AAVA  +G   V GVVR  Q++ EL  IE    GL PG HG  ++++GDLT    S G
Sbjct:    3 SKSGDGGTMCAL-EFTVQMSCQSCVDAVHKTLKGAAGVQNVEVQLENQMVLVQTTLPSQEVQALLESTGRQAVLKGMGSSQLKNLGAAVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCG 145          

HSP 2 Score: 22.7126 bits (47), Expect = 4.707e-22
Identity = 15/33 (45.45%), Postives = 17/33 (51.52%), Query Frame = 1
Query:  709 GDPGNRIADEKR*ALFFRCKXMLKIADPIGRSL 807
            GD GN  A+    A F      LK+ D IGRSL
Sbjct:  166 GDLGNVHAEASGRATFRIEDKQLKVWDVIGRSL 198          
BLAST of EY659582 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.968e-22
Identity = 60/144 (41.67%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  236 TSQGDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKG-PDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTTSAVSTG 664
            +  GD G    L E+ V M C+ CVDAV + L+ V GV+NV+V L NQ+V +  + P + +   LE TGR+A L G G  +   + AAVA  +G   + GVVR  Q++ EL  IE    GL PG HG  ++++GDLT    S G
Sbjct:    3 SKSGDGGTVCAL-EFAVQMSCQSCVDAVHKTLKGVAGVQNVDVQLENQMVLVQTTLPSQEVQALLESTGRQAVLKGMGSSQLQNLGAAVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCG 145          

HSP 2 Score: 22.3274 bits (46), Expect = 7.968e-22
Identity = 19/57 (33.33%), Postives = 23/57 (40.35%), Query Frame = 1
Query:  643 NKCSEHWQSYYPKIEG--SAKEPLGDPGNRIADEKR*ALFFRCKXMLKIADPIGRSL 807
            N C +H+        G        GD GN  A+    A F      LK+ D IGRSL
Sbjct:  142 NSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKVWDVIGRSL 198          
BLAST of EY659582 vs. ExPASy Swiss-Prot
Match: CCS1_ASHGO (Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii GN=CCS1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.075e-12
Identity = 50/135 (37.04%), Postives = 69/135 (51.11%), Query Frame = 2
Query:  278 YMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFK-----GPDVFGVVRLAQVNMELARIEANFSGL-SPGKHGWSINEFGDLTTSAVSTG 664
            Y V M C  C   + + L+ V GV+ V  DL  Q+V + G +P  ++ +AL  TGR A L G G P+    SAAVA  +     GP V G+VR  QV       +   +GL  P ++  SI   GD++  A STG
Sbjct:   12 YAVPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRGIAPPSSIVQALAATGRDAILRGSGEPD----SAAVAILESASAGGPPVRGLVRAVQVAPNKTLFDITLNGLPGPAQYYASIRASGDVSRGAASTG 142          
BLAST of EY659582 vs. ExPASy Swiss-Prot
Match: CCS1_YARLI (Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica GN=CCS1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.333e-12
Identity = 40/136 (29.41%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  272 TEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPED---FLVSAAVAEFKGPDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTTSAVSTGRV 670
            T + V ++CE C D+VKQ L  V G+++V+  L +Q++ + G+S    + +A++  G+ A + G G P      ++ +   E +   + G+ R+  V+  LA I+   +GL  G +  SI   GD++ +  S G V
Sbjct:    5 TTFAVPLECESCCDSVKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAVQNIGKDAIVRGTGQPNSAAVCILESHAPEDQAQPIKGLARIVSVSKTLALIDITLNGLPKGTYYPSIRTSGDISDAPQSLGGV 140          
BLAST of EY659582 vs. ExPASy Swiss-Prot
Match: CCS1_DEBHA (Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii GN=CCS1 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 42/136 (30.88%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  278 YMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGPD-------VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTTSAVSTG 664
            + V M+C+ CVD+V   L+++ G+   ++DL + +V   GS P   + +A++ TG+ A + G G P     SAAV   +  D       V G+ R+  V      ++   +GL  G +  SI + G+L+  A+STG
Sbjct:    9 FAVPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAIQSTGKDAIIRGTGAPN----SAAVCILESFDPKDIQQPVKGLARIVSVGANDLVVDLTVNGLPQGVYYPSIRKSGNLSKGALSTG 140          
BLAST of EY659582 vs. ExPASy Swiss-Prot
Match: CCS1_KLULA (Superoxide dismutase 1 copper chaperone OS=Kluyveromyces lactis GN=CCS1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.515e-11
Identity = 41/133 (30.83%), Postives = 67/133 (50.38%), Query Frame = 2
Query:  278 YMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP---DVFGVVRLAQVNMELARIEANFSGL-SPGKHGWSINEFGDLTTSAVSTG 664
            Y V+M CE C + +++ L+ V G+KNV  D+ + ++ + G +    +  AL+  GR   + G G P    VS       GP    V G+VR+ +V  +    + N +G+  PG +  S+   GDL+    STG
Sbjct:   13 YAVEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIINALKNCGRDGIIRGTGKPNSAAVSILGQYTTGPFENTVKGLVRIVEVAQKKTFFDINLNGVEKPGLYYASVRASGDLSEGVKSTG 145          
The following BLAST results are available for this feature:
BLAST of EY659582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CCS_PIG1.263e-2242.86Copper chaperone for superoxide dismutase OS=Sus s... [more]
CCS_HUMAN2.137e-2242.36Copper chaperone for superoxide dismutase OS=Homo ... [more]
CCS_RAT4.707e-2242.36Copper chaperone for superoxide dismutase OS=Rattu... [more]
CCS_MOUSE7.968e-2241.67Copper chaperone for superoxide dismutase OS=Mus m... [more]
CCS1_ASHGO1.075e-1237.04Superoxide dismutase 1 copper chaperone OS=Ashbya ... [more]
CCS1_YARLI5.333e-1229.41Superoxide dismutase 1 copper chaperone OS=Yarrowi... [more]
CCS1_DEBHA2.027e-1130.88Superoxide dismutase 1 copper chaperone OS=Debaryo... [more]
CCS1_KLULA4.515e-1130.83Superoxide dismutase 1 copper chaperone OS=Kluyver... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659582 ID=EY659582; Name=EY659582; organism=Citrus sinensis; type=EST; length=918bp
GATGACAGTGGCAACGTTAGCAACAGCCACAACAACAACAGCAGTAGCGG
CCTTTGCCTTCTCTTCTTCTTCTTCTTTTACGTCAAAATCTCATCAACCC
AAATCCCAAAATCTCTCCTTTTTCTCTTCACAATCTCTCTCACTTCTCTA
TTCAAATAAATCGCCTCTTGTCAAAAACTTCAGCAACCCACCTTCCGCTC
TTCCCATGGACGCTCCCACATCTGATCACAAAAACACATCCCAGGGGGAT
CAGGGGTTGCCTGAGCTTCTGACAGAATACATGGTGGACATGAAGTGTGA
GGGTTGCGTTGATGCCGTCAAGCAGAAGTTGCAGACTGTTACTGGAGTCA
AGAATGTTGAGGTGGACTTGAGCAATCAAGTTGTGAGAATTTTGGGATCT
TCACCTCTGAAGACCATGACCGAAGCTTTGGAGCAAACGGGACGAAAAGC
CCGGTTAGTTGGACAAGGGGTGCCTGAAGATTTTTTAGTCTCCGCTGCCG
TTGCTGAATTCAAAGGTCCAGATGTATTTGGTGTGGTTCGCTTGGCTCAA
GTGAATATGGAATTGGCTAGGATTGAAGCCAACTTTAGTGGGCTCTCACC
TGGAAAACATGGCTGGTCTATTAATGAATTTGGTGATCTGACAACAAGTG
CAGTGAGCACTGGCAGAGTTATTATCCAAAGATTGAAGGGAGTGCGAAAG
AGCCACTTGGTGACCCTGGAAACAGAATTGCTGATGAGAAAAGGTGAGCC
CTCTTCTTCAGGTGTAAANAAATGCTGAAAATTGCTGATCCTATTGGGCG
ATCCTTGGGGGGTAATGGCTCGAAAAAAAATAGATTCAGGGGTCCCACAA
GCGGTATTGCTCAAATGCGAGGATGGGGAGGAACACAAAAGATTGGCCCT
GGGGAGGAACACTCTTGG
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