EY659563

Overview
NameEY659563
Unique NameEY659563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659563_ssr261 microsatellite EY659563_ssr261:261..275. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:1..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659563 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.182e-51
Identity = 113/177 (63.84%), Postives = 132/177 (74.58%), Query Frame = 2
Query:  170 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 676
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of EY659563 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.164e-37
Identity = 91/198 (45.96%), Postives = 126/198 (63.64%), Query Frame = 2
Query:  101 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 676
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of EY659563 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.407e-33
Identity = 75/131 (57.25%), Postives = 93/131 (70.99%), Query Frame = 2
Query:  290 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 676
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of EY659563 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.737e-32
Identity = 86/189 (45.50%), Postives = 111/189 (58.73%), Query Frame = 2
Query:  113 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 676
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of EY659563 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.097e-32
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 2
Query:  317 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 664
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of EY659563 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18
Identity = 61/128 (47.66%), Postives = 73/128 (57.03%), Query Frame = 2
Query:  293 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 664
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of EY659563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.182e-5163.84Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL2.164e-3745.96Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU9.407e-3357.25High molecular mass early light-inducible protein ... [more]
ELI9_HORVU2.737e-3245.50Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU6.097e-3258.12Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA2.249e-1847.66Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659563 ID=EY659563; Name=EY659563; organism=Citrus sinensis; type=EST; length=782bp
ATTCCAGGCCTCGACCCACGCGTCCGCAAGGTATTCGCCGACCTGAAGCA
CCCAATTCCCGAATTATACTTTGTTCTGTTTTCTACTTCATAAATTAAAA
ATGGCCGCATCACTTGCTACTCAATCTATGCTGGCAAGTCCTGTAGCAGC
TCGTGTGACTGGTATCAGGAGATCCGGGGCAAACCAACTTTCCTCCGTCA
AGTACTTGCCTAGTCTGCGTAGAAATGTCAACTTATCCGTGCGCTGCACG
GCAGAGGATGAGCAGCAGCAGCAGCAGAAAGATGATCAACCAACCATACC
GAAAGCTGAGCCTCAGCCACCAAAGAAGCCGCGGATGAGCACGGGGTTCT
CTGAGGTGTTTGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGG
CTTGCGATGATTGGGTTCGTGGCTGCATTGGGGGTGGAGATATCCAAGGG
TCAGGATGTGTTTGCCCAGTTATCAGACGGTGGGGTTGCCTGGTTCTTGG
GGACCAGTGTTTTGCTCACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGT
GTCAGCGTGGAGTCTAAATCGGATGGGTTCATGACTTCGGATGCTGAGTT
GTGGAATGGGAGGTTTGCTATGCTGGGCCTTGTTGCTTTGGCTTTCACCG
AGTTTGTTAAGGGTGGCACCCTTGTTTAAGCTTAATTTTGTTTAGATCTG
TAGATCTGTATTTTTTTTAACTAATTAATGTATGAGATCCTACTGTAATT
AAATCTCTATCTCTCAAAAAAAAAAAAAAAAA
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