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Overview
Name | EY659549 |
Unique Name | EY659549 |
Type | EST |
Organism | Citrus sinensis (Sweet orange) |
Sequence length | 921 |
Analyses
This EST is derived from or has results from the following analyses
Alignments
Feature Name | Type | Location | Analysis |
EY659549_ssr557 |
microsatellite |
EY659549_ssr557:557..566. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
EY659549_ssr666 |
microsatellite |
EY659549_ssr666:666..675. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
EY659549_ssr397 |
microsatellite |
EY659549_ssr397:397..408. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
EY659549_ssr409 |
microsatellite |
EY659549_ssr409:409..428. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
EY659549_ssr564 |
microsatellite |
EY659549_ssr564:564..575. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
Homology
BLAST of EY659549 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.268e-21 Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 49 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEADSSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDW 378
+L+KLWDD+VAGPQP+RGLG LRK+ PL +K+ GE+ S RKDNVWRSVFHPGSNL+++ +G +VFD P PNSPTVYDW
Sbjct: 3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDW 99
The following BLAST results are available for this feature:
Properties
Property Name | Value |
Genbank description | CS00-C1-101-011-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence. |
Sequences
The
following sequences are available for this feature:
EST sequence >EY659549 ID=EY659549; Name=EY659549; organism=Citrus sinensis; type=EST; length=921bp AGAAGAGCTATAGATTTAGAAACTAGCAGCTAACTCGTAAATTTAAAGAT GCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTG GCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCAGTCAAAGAG GGTGGTGAGGCGGATTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAAT GCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGACGACGCCGC TGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGC AACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACA TCCTAACTCTCCCACTGTTTATGACTGGTAAGTACGTGCGTGTGTCCTCA CTCACTCACTCGCTCGCTCGCTCGCTCGCTCTTCACTTGCATAGATGCTG CATGCTTGTTCTAACTTATTATTCTTTCTTTAGACCCTTATCAGTTGAAC GCAAAGGCAACTTGTACTCTATCTATATATGTTTAATCATGTTCGGTTGC TGATAAATATATATATTTATTTATTAATTTGGTCTCTTTTTCTCCCCCCC TTTTTTAAAACTGAATTAATTCCCCGATCAGAAAAAAAACCGCAGCTTAT TATATTCATGTGTGCGTGTGTGTGTTTTTTAAAAAGAAAATGATTGAACC AAATCGATGGAGCATAAACTCAAACATCTCTGTTTTTGTTTTGTTTTTTT TGCGGTCTTACTGGCTCTCTCAGCAACCAATAAAGGCTAAAGAATGAGGA AACCTGGACTTTGTTTATGGGCGCGTGAATAGAACTTGGCTTATCAGAAT GATCCTCATTCCACTTTTTGGAATCCTGCATTCTTCCTATTAAAGCAATG AGGATAATAATATTTTGGGTT back to top
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