EY659523

Overview
NameEY659523
Unique NameEY659523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CITSI (50S ribosomal protein L33, chloroplastic OS=Citrus sinensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.114e-23
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GK+V +RVI+ECT  VRNG N ESRG+S YITQ NRH+TP RLEL KFCPYCYKHTLHGEI K
Sbjct:    1 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_DRIGR (50S ribosomal protein L33, chloroplastic OS=Drimys granadensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.944e-22
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+ECT  VRN  N ESRG+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRIRVILECTSCVRNDLNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CERDE (50S ribosomal protein L33, chloroplastic OS=Ceratophyllum demersum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.944e-22
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+ECT   RNG N ESRG+S YITQ NRH+TP RLEL KFCPYCYKHT HGEI K
Sbjct:    1 MAKGKDVRVRVILECTSCARNGGNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTTHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_BUXMI (50S ribosomal protein L33, chloroplastic OS=Buxus microphylla GN=rpl33 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.944e-22
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+ECT  VRNG N ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVRVILECTSCVRNGVNKESLGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_GUIAB (50S ribosomal protein L33, chloroplastic OS=Guizotia abyssinica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.330e-22
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + V++ECT  VRNG N ES G+S YITQ NRH+TP RLEL+KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRIPVLLECTACVRNGVNKESTGISRYITQKNRHNTPNRLELLKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_EUCGG (50S ribosomal protein L33, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.645e-22
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV + VI+ECT  VR G N ESRGVS YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRVTVILECTNCVRTGLNKESRGVSRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_HELAN (50S ribosomal protein L33, chloroplastic OS=Helianthus annuus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.260e-21
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  + V++ECT  VRNG N ES G+S YITQ NRH+TP RLEL+KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDARIPVLLECTACVRNGVNKESTGISRYITQKNRHNTPNRLELLKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_PLAOC (50S ribosomal protein L33, chloroplastic OS=Platanus occidentalis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.806e-21
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV +RVI+EC   VRNG N ES GVS YITQ NRH+TP RLEL KFCPYC+KHT+HGEI K
Sbjct:    1 MAKGKDVRVRVILECINCVRNGVNKESPGVSRYITQKNRHNTPSRLELRKFCPYCFKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CARPA (50S ribosomal protein L33, chloroplastic OS=Carica papaya GN=rpl33 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.806e-21
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKD  + +I+ECT  VRNG N ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDARVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66          
BLAST of EY659523 vs. ExPASy Swiss-Prot
Match: RK33_CHLSC (50S ribosomal protein L33, chloroplastic OS=Chloranthus spicatus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.665e-21
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 3
Query:  291 MANGKDVLLRVIVECTMRVRNGANDESRGVSIYITQNNRHSTPMRLELIKFCPYCYKHTLHGEITK 488
            MA GKDV   VI+ECT  VRNG N ES G+S YITQ NRH+TP RLEL KFCPYCYKHT+HGEI K
Sbjct:    1 MAKGKDVRAIVILECTSCVRNGVNKESPGISRYITQRNRHNTPNRLELRKFCPYCYKHTIHGEIKK 66          
The following BLAST results are available for this feature:
BLAST of EY659523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RK33_CITSI5.114e-2375.7650S ribosomal protein L33, chloroplastic OS=Citrus... [more]
RK33_DRIGR1.944e-2274.2450S ribosomal protein L33, chloroplastic OS=Drimys... [more]
RK33_CERDE1.944e-2274.2450S ribosomal protein L33, chloroplastic OS=Cerato... [more]
RK33_BUXMI1.944e-2274.2450S ribosomal protein L33, chloroplastic OS=Buxus ... [more]
RK33_GUIAB4.330e-2271.2150S ribosomal protein L33, chloroplastic OS=Guizot... [more]
RK33_EUCGG9.645e-2274.2450S ribosomal protein L33, chloroplastic OS=Eucaly... [more]
RK33_HELAN1.260e-2169.7050S ribosomal protein L33, chloroplastic OS=Helian... [more]
RK33_PLAOC2.806e-2172.7350S ribosomal protein L33, chloroplastic OS=Platan... [more]
RK33_CARPA2.806e-2169.7050S ribosomal protein L33, chloroplastic OS=Carica... [more]
RK33_CHLSC3.665e-2172.7350S ribosomal protein L33, chloroplastic OS=Chlora... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-011-A12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659523 ID=EY659523; Name=EY659523; organism=Citrus sinensis; type=EST; length=916bp
GCAAAGATTACGGAAATCGAAATATGGGGTGGGGCAGAGTATTCTCCACT
ACAATATCCTTAGATGAAATACTGGACTGCGATTCAGCAATATAGTTAGA
AATTCTTGTGTCACTTATTATTTTTTATTGTGAGATCCTATTTATTGACT
ATATTGATTGCAATAAAATCTTTATTTCATAAGTTTTCTTGGAGTGGTTA
GCGACTTCTATTTTTTTGTGCCGACGCTTCTTATTCGTAGCGGGTCGGAA
AATAAAATAGCTGGGTGAATCAAAAACCCCAATGAGGCTGATGGCCAACG
GTAAGGACGTCCTATTAAGGGTTATTGTGGAATGTACTATGAGAGTTCGA
AACGGTGCCAATGACGAATCAAGGGGTGTTTCCATATATATTACTCAGAA
TAATCGACACAGTACACCCATGCGATTGGAATTGATAAAATTCTGTCCCT
ATTGTTACAAGCATACACTTCATGGGGAGATAACAAAATAGATTGAGTCA
AGCCTGGTGCTTTTGTGCCACCCTTCCGAGGGACATGACATACTACTCTA
TATGTATATCTACATTATCTCATATATCTTAATGAGAACATATATATAAG
TGTATACATACCAGATGCTATGATCGATGCTATAAATCATTGTTTGATTT
CATCGAAATGAGACTCTACGGATAAGGAATAAACAAATTATGGATAGAAC
CAAGCGACTCATTGCTAAATGCAAGCGATATATGGGTAGGCGGTTGCCCA
CGATCCAATCGTGGATCGAATTGATATACAAACCTGACTTGATTAGTCGA
TTCCTATTGGACAGGGAAAATTTATCTAGGCGGCGAATAGATGGACTTCA
AGAGCACGATCATTCCTATTGCTATAAACAGGCTCGATTTATGTTGGTAC
TTTCTTATATGCCAAA
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