EY659486

Overview
NameEY659486
Unique NameEY659486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659486 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.121e-22
Identity = 69/204 (33.82%), Postives = 107/204 (52.45%), Query Frame = 1
Query:  133 DGSLTRH-NKF--PTVPPSASITDQLALSKDVPLNPQNKTFLRLFKPKDI---PPNTKL---------PLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVXLVLNQPFFGGVXETEIEKR 696
            DG+  RH  +F    VP +A+  + +  S DV ++ Q     R+++P D    P  T L         P+I++FHGG +   SA++ I+   C +L     A+++SV+YR APE+R P A+DD    ++WV   +    WLR   D   + FL G SSGG I ++  +RA++      S + ++  +L  P FGG   TE EKR
Sbjct:   38 DGTFNRHLAEFLDRKVPANANPVNGV-FSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS----WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE------SRIDVLGNILLNPMFGGTERTESEKR 230          

HSP 2 Score: 26.1794 bits (56), Expect = 1.121e-22
Identity = 9/21 (42.86%), Postives = 12/21 (57.14%), Query Frame = 3
Query:  732 DLMWDLSVPKGADRDHEYCXP 794
            D  W   +P+G DR+H  C P
Sbjct:  243 DWYWRAFLPEGEDREHPACSP 263          
BLAST of EY659486 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.702e-21
Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 1
Query:  268 DIPPNTKLPLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADL-SKCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVXLVLNQPFFGGVXETEIEKR 696
            D P     P+II+FHGG ++  SA + I+ + C +       +++SV+YR APEHR P A+DD   +++WV  Q    P++R   D  ++ FL G SSGG IA+H  +RA D        VK+   +L    FGG   TE E+R
Sbjct:  106 DAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQ----PFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAAD------EGVKVCGNILLNAMFGGTERTESERR 239          
BLAST of EY659486 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.457e-21
Identity = 53/150 (35.33%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  247 LRLFKPKDIPPNTKLPLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVXLVLNQPFFGGVXETEIEK 693
            L L KP  +     +P++I+FHGG +   SA++ I+   C +L      +++SVDYR +PEHR P A+DD   ++ WV+ +     WL+   D +   +L G SSGG IA++  +RA +        VK++  +L  P FGG   T+ EK
Sbjct:   94 LELTKP--LSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV----WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATN------EGVKVLGNILLHPMFGGQERTQSEK 231          

HSP 2 Score: 28.4906 bits (62), Expect = 4.457e-21
Identity = 11/26 (42.31%), Postives = 13/26 (50.00%), Query Frame = 3
Query:  732 DLMWDLSVPKGADRDHEYCXPIASVG 809
            D  W   +P+G DRDH  C P    G
Sbjct:  245 DWYWRAYLPEGEDRDHPACNPFGPRG 270          
BLAST of EY659486 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.361e-19
Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 1
Query:  232 QNKTFLRLFKPKDIPPNTKLPLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVXLVLNQPFFGGVXETEIEK 693
            Q  + L L KP D      +P+I++FHGG +   SA++ I+   C +L      +++SV+YR APE+  P A+DD   ++ WV  ++    WL+   D     FL G SSGG IA++  LRA +      S + ++  +L  P FGG   TE EK
Sbjct:   90 QPPSILDLEKPVD---GDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE------SGIDVLGNILLNPMFGGNERTESEK 231          

HSP 2 Score: 27.7202 bits (60), Expect = 1.361e-19
Identity = 10/26 (38.46%), Postives = 14/26 (53.85%), Query Frame = 3
Query:  732 DLMWDLSVPKGADRDHEYCXPIASVG 809
            D  W   +P+G DR+H  C P +  G
Sbjct:  245 DWYWKAFLPEGEDREHPACNPFSPRG 270          
The following BLAST results are available for this feature:
BLAST of EY659486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH1.121e-2233.82Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GID1_ORYSJ2.702e-2138.19Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L2_ARATH4.457e-2135.33Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH1.361e-1935.48Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659486 ID=EY659486; Name=EY659486; organism=Citrus sinensis; type=EST; length=892bp
GGTNCGCACCCCAGCTTCGGTNCCGGNATTCCCGCCCTCGACCCAGCGTC
CGAACAGATGGTGGCAATGGCAGAAGAACAAATTCAATGTTCCGTAGACC
CTTTTGAGTTACTCAAAATCTCCCTCAACTCGGACGGCTCACTCACGAGA
CACAACAAATTCCCCACTGTTCCGCCATCGGCATCGATAACCGACCAGCT
CGCCCTCTCCAAAGATGTCCCACTCAACCCCCAAAACAAAACTTTCCTTC
GCTTATTTAAACCCAAGGATATTCCCCCCAACACAAAGCTCCCTCTTATT
ATATACTTCCATGGCGGCGGCTACATTTTGTTCAGTGCTGACGCTTTCAT
TTTTCACAACTCGTGCTGCCAACTGGCGGCTTTTATCCCCGCTTTAATCC
TGTCGGTTGATTACCGTCTCGCCCCCGAACACCGCCTTCCTGCAGCCTTT
GATGACGCCATGGAATCCATCCAGTGGGTCCGCGACCAGGCTCTTGGTGA
CCCGTGGCTGAGAGATTACGCCGATCTATCCAAGTGTTTTCTGATGGGCT
CCAGCTCTGGCGGCGGCATCGCTTACCATGCCGGGTTACGTGCATTGGAC
TTGGATGCTGATCATCTTTCGCCGGTGAAGATCGTANGGCTCGTGCTCAA
TCAGCCATTTTTCGGTGGGGTCCNAGAGACTGAAATCGAGAAAAGATGAT
CGNACGACAGCTCTGTCCGTTGAGTGCAACGGATCTCATGTGGGACCTGT
CNGTGCCGAAAGGTGCGGATCGCGATCATGAATATTGCNATCCGATCGCA
AGTGTGGGAACTAACGATNAGATCGGACGGCTGNCAGTAGTTTTGTGGGA
TGACGCGAGGGGGACCCGTGATCGACAGAAAAAGAGTATCAA
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