EY659417

Overview
NameEY659417
Unique NameEY659417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659417_ssr855 microsatellite EY659417_ssr855:855..866. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig131 contig Csv1_Contig131:814..1712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659417 vs. ExPASy Swiss-Prot
Match: CO058_MOUSE (UPF0580 protein C15orf58 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.063e-33
Identity = 84/226 (37.17%), Postives = 122/226 (53.98%), Query Frame = 2
Query:    8 SAFLWQWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDAC 685
            SA    W  R++ GLFRY +   +T+++PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF K+   EVLF+ +    G     P+ P   +    +V INVSP+E+GHVLL+P   + LPQR+      + L     + +P FR+G+NSLG  A++NHLH   YY+A P P+E AP+  +   G    I  L   P  G +F       DL   +S  C
Sbjct:   61 SALRSAWRQRLELGLFRYRLEDLQTQILPGSVGFVAQLNIERGIQRRRPQ-NIRSVRQEFDPEQFNFNKIRPGEVLFRMQREPKG-----PATP--KQEDDVLVVINVSPLEWGHVLLVPAPAQGLPQRLLPGVLRVGLEAVLLSLHPGFRVGFNSLGGLASVNHLHLHCYYLAHPLPVEGAPSTPLDPKGC---IHLLQALPAPGFLFYTSGPGPDLEVLISRVC 275          
BLAST of EY659417 vs. ExPASy Swiss-Prot
Match: CO058_HUMAN (UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf58 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.063e-33
Identity = 80/220 (36.36%), Postives = 121/220 (55.00%), Query Frame = 2
Query:   26 WEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDAC 685
            W+ RV+ GLFRY +   +T+++PG  GF+AQLN  R +++RP +  +  V Q FD  +FNF K+   EVLF+            P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH   YY+A   P+E+AP++ +     G  +  L + P  G +F       DL + +S  C
Sbjct:   67 WKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRPPQ-TIKSVRQAFDPVQFNFNKIRPGEVLFRLHRE--------PDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPL---DPGGHLHLLQDLPAPGFLFYTRGPGTDLESLISRVC 274          
BLAST of EY659417 vs. ExPASy Swiss-Prot
Match: CO058_BOVIN (UPF0580 protein C15orf58 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.835e-32
Identity = 79/226 (34.96%), Postives = 118/226 (52.21%), Query Frame = 2
Query:    8 SAFLWQWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDAC 685
            SA    W  R++ GLFRY +    T+ +PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF ++   EVLF+    +D            V+    +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH   YY+A   P+E AP++ +   G   ++  L   P  G +F       DL   +S  C
Sbjct:   61 SALCSAWRQRMELGLFRYPLGELPTQTLPGTVGFVAQLNVERGVQRRCPQ-NIKSVRQEFDPEQFNFNQIRPGEVLFRLHRKQD--------CSGTVQQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGVEAVLLSSHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEGAPSEPLDPRG---RLHVLQALPAPGFLFYTSRPGPDLEALISRVC 274          
BLAST of EY659417 vs. ExPASy Swiss-Prot
Match: CO058_MACFA (UPF0580 protein C15orf58 homolog OS=Macaca fascicularis GN=QflA-20034 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.300e-31
Identity = 77/220 (35.00%), Postives = 118/220 (53.64%), Query Frame = 2
Query:   26 WEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDAC 685
            W+ RV+ GLFRY +   +T+++PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF K+   EVL++            P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH   YY+A   P+E+AP++ +     G  +  L   P  G +F       DL + +   C
Sbjct:   67 WKQRVELGLFRYRLRELQTQILPGVVGFVAQLNVERGVQRRRPQ-TIKSVRQAFDPEQFNFNKIQPGEVLYRLHRE--------PDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPL---DPGGHLHLLQGLPAPGFLFYTRGPGLDLESLICRVC 274          
BLAST of EY659417 vs. ExPASy Swiss-Prot
Match: CO058_XENTR (UPF0580 protein C15orf58 homolog OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.462e-30
Identity = 76/244 (31.15%), Postives = 127/244 (52.05%), Query Frame = 2
Query:   23 QWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASE-DGEVQFH----------------------PSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLEDLSNTVSDAC 685
            +WE+++  GLFRY +   +T+++PG   ++AQLN  R + +R  E  +  V Q F+ N+FN+ K+  EE++FQ   SE +  V  H                       S  ++ ++S ++V INVSP+E+GHVL +P    CLPQ +  +  L  +     + +P FR+G+NSLG FA++NHLH   +Y+     IE + +K +      +    + ++P  G +F      +DL +T    C
Sbjct:   53 KWEEKMNEGLFRYPLRNVQTKILPGSVSYVAQLNIQRSINRRKPE-DIWSVQQKFNPNQFNYNKIKSEEIVFQMIRSEAEHSVDSHIVQGSMVNGMGSSECKSGSTPQGSCTLECKSSCTLVVINVSPLEFGHVLFMPDPSLCLPQILTENLMLFGMESVFLSSHPGFRVGFNSLGGFASVNHLHLHGFYLDHELLIESSCSKPLCPE---INFHLVTHFPAPGFLFYTDG--KDLKSTAQKIC 290          
BLAST of EY659417 vs. ExPASy Swiss-Prot
Match: CO058_DANRE (UPF0580 protein C15orf58 homolog OS=Danio rerio GN=zgc:153343 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.316e-30
Identity = 71/210 (33.81%), Postives = 114/210 (54.29%), Query Frame = 2
Query:   26 WEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVFEGGNSLE 655
            W ++   GLFRY +   ETR++PG  G+IAQLN  R  ++R  +  +  V Q FD  +FNF K+  +E+LF+ +   + +                 V INVSP+E+GH LL+P   +C PQ +   +    +     + +P FR+G+NSLG FA++NHLH   YY+     IE +P K ++     + + EL+++P   L +  G +L+
Sbjct:   39 WTEKRNTGLFRYRLDELETRILPGSRGYIAQLNIMRGTERRKPQ-EILSVRQNFDPKQFNFNKINPKELLFELKRESERKCS---------------VIINVSPLEFGHCLLVPEPEKCFPQVLTHLAVQTGIETVLLSADPGFRVGFNSLGGFASVNHLHLHGYYLNHRLKIESSPAKLVL---PNLNLYELVDFPSGFLFYTQGPNLD 229          
BLAST of EY659417 vs. ExPASy Swiss-Prot
Match: CO058_XENLA (UPF0580 protein C15orf58 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.997e-28
Identity = 78/260 (30.00%), Postives = 131/260 (50.38%), Query Frame = 2
Query:   23 QWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEV----QFHPSAP-------------------IDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKISELLNYPVRGLVF--EGGNSLEDLSN--TVSDACIC--LSENTFLT 715
            +WE ++  GLFRY +   +T+++PG   ++AQLN  R + +R  E  +  + Q F+ N+FN+ K+  EE++FQ   SE        + H S+                    ++ +   ++V INVSP+E+GHVL +P    CLPQ +  D  L  L     + +P FR+G+NSLG FA++NHLH   +Y+     IE + +K +      +    + ++P    +F  +G N      N   V+D  +   ++ N F+T
Sbjct:   54 KWEQKMNEGLFRYPLRNLQTKILPGSLSYVAQLNIQRSINRRKPE-DIWSIQQKFNPNQFNYNKIKPEEIVFQMIRSETEHCVDSDKVHGSSVNGMGTSDCKSGSTHQRCCILECKGGCTLVVINVSPLEFGHVLFMPDPSLCLPQILTEDLMLFGLESVLLSAHPGFRVGFNSLGGFASVNHLHLHGFYLDHDLFIESSSSKPLCPE---MNFHLITHFPAPSFLFYTDGRNLKSTAQNICKVTDFLVAKNIAHNLFIT 309          
The following BLAST results are available for this feature:
BLAST of EY659417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CO058_MOUSE1.063e-3337.17UPF0580 protein C15orf58 homolog OS=Mus musculus P... [more]
CO058_HUMAN1.063e-3336.36UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf... [more]
CO058_BOVIN5.835e-3234.96UPF0580 protein C15orf58 homolog OS=Bos taurus PE=... [more]
CO058_MACFA1.300e-3135.00UPF0580 protein C15orf58 homolog OS=Macaca fascicu... [more]
CO058_XENTR5.462e-3031.15UPF0580 protein C15orf58 homolog OS=Xenopus tropic... [more]
CO058_DANRE9.316e-3033.81UPF0580 protein C15orf58 homolog OS=Danio rerio GN... [more]
CO058_XENLA2.997e-2830.00UPF0580 protein C15orf58 homolog OS=Xenopus laevis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-H07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659417 ID=EY659417; Name=EY659417; organism=Citrus sinensis; type=EST; length=896bp
CCACGCGTCCGCGTTCTTGTGGCAGTGGGAGGACCGCGTACAGAGAGGAC
TATTTCGCTATGATGTTACTGCCTGTGAAACCAGGGTCATTCCTGGTCAG
TATGGTTTCATTGCTCAACTGAACGAGGGCCGCCACCTGAAGAAAAGGCC
TACTGAGTTCCGTGTTGATAAGGTCCTCCAGCCTTTTGATGGGAACAAGT
TCAACTTTACCAAAGTGGGGCAAGAAGAGGTGCTCTTCCAGTTTGAGGCA
AGCGAAGATGGTGAAGTCCAGTTTCACCCAAGTGCCCCCATTGATGTTGA
GAATTCTCCAAGTGTTGTTGCCATCAATGTGAGTCCTATTGAGTACGGGC
ATGTGCTGTTGATCCCACGAGTTCTTGAGTGCTTGCCACAGAGGATTGAC
CGTGATAGCTTCTTGCTCGCACTTTACATGGCTGCAGAAGCTGGGAATCC
ATACTTCAGGTTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCAACC
ACCTTCACTTCCAGGCTTACTACATGGCCTTGCCTTTTCCAATTGAGAAG
GCTCCTACCAAGAAGATAATCTCTACTGGCAGTGGTGTGAAGATCTCTGA
GCTTTTAAACTATCCAGTCAGAGGCCTCGTCTTTGAAGGTGGAAACTCTC
TGGAAGACTTATCCAACACAGTCTCGGATGCGTGCATTTGCCTTTCAGAG
AACACATTCCTTACATGTTCTCATTGCTGATTGTGGAAGCGCATATTTCT
CTTACACAGTGCTATGCTGAGAAACAGCTCTTGGGGAAGTGAGTTCAGAG
CTTCTGGACACCCAAGTGACCCTGCTGTGTGGGAATTAGTGGGCTTATGG
TGTTAAGAAGAAGAAGACTATGAGNAGCATCGAGGAAATGCTTGGA
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