EY705314

Overview
NameEY705314
Unique NameEY705314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY705314 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 8.514e-49
Identity = 96/180 (53.33%), Postives = 118/180 (65.56%), Query Frame = 3
Query:   24 ATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD-----AVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPP 548
            A+G SRVLQGQE+STLR    E  S E D  E SVVW  S DD+K+DVVS SRRYGSENW+   RHEP YTDLLSGFG N DPSHG   PF D     ++P ++ + D EGKF+ +A  W ++ SG SLK+ ES  KVP    D + Q R NV+Y    +YP+LNG   E++ GNW + P
Sbjct:  441 ASGLSRVLQGQEYSTLRTKHTE--SVECDAPENSVVWQSSADDDKVDVVSGSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSEGKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKY---SEYPVLNGLSTENAGGNWPIRP 613          

HSP 2 Score: 41.2022 bits (95), Expect = 8.514e-49
Identity = 21/55 (38.18%), Postives = 32/55 (58.18%), Query Frame = 2
Query:  575 AHSRELMPKSAMGADQEAGKSKD--CKLFGIPLFSNHVMPEPVVSHRNTMNEPAG 733
            A +RE + K      +E  KS++  C+LFGIPL +N    +  +S RN +N+ AG
Sbjct:  629 AQAREQVTKQPFTIQEETAKSREGNCRLFGIPLTNNMNGTDSTMSQRNNLNDAAG 683          
The following BLAST results are available for this feature:
BLAST of EY705314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARFB_ARATH8.514e-4953.33Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705314 ID=EY705314; Name=EY705314; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGCCCACGCGTCTTGCTACTGGATTTTCAAGGGTCTTGCAA
GGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAGAGAGAAAGTAA
CGAGTCTGACACTGCTGAAAAGTCTGTTGTGTGGCCACCTTCACTTGATG
ATGAGAAGATTGATGTGGTGTCTGCTTCAAGAAGATATGGATCAGAGAAC
TGGGTGCCACCAGGGAGGCATGAACCAGTGTACACTGATTTGCTGTCAGG
ATTTGGAGCAAATGCTGATCCCTCCCATGGGTTTAGTTCACCTTTTGCTG
ATGCTGTTCCAGTAAGAAAAAGTGTGCTGGATCAGGAGGGGAAGTTTAAC
TTGGTTGCTCGACCATGGTCCTTGATGCCCTCTGGTCCATCACTTAAAAT
GCCAGAGTCTAATGCAAAAGTTCCAGTACAAGGTGGTGATGTAAATTATC
AAGTGCGTGGTAATGTTAGATATGGCGGGTTTGGTGACTATCCCATGCTT
AACGGCAATAGAGTTGAGCACTCACATGGAAACTGGTTAATGCCCCCCCT
TCCCCCTTCTAATTTGAAAATTCAGCTCATTCGAGAGAGTTGATGCCCAA
ATCAGCAATGGGTGCAGACCAAGAGGCTGGAAAATCTAAGGACTGCAAGC
TTTTTGGCATTCCCCTCTTCAGTAACCATGTTATGCCAGAGCCCGTAGTA
TCACATAGAAACACCATGAATGAGCCGGCTGGAACTTAGATTCACAAATT
CGTGCATTTGAATCAGATCAAAGTCAGAACATCCTAAAAGCTCAAAATTG
GAGATGATAATCAGGTTTTCATGAGACGAGAAACGTCCCAGCTTCTCGAC
CACACTAGGATGTCGTANCAAACGCATGTGGTCNACTAGGAGTTGACTAG
GTCAAAGAGG
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