EY705311

Overview
NameEY705311
Unique NameEY705311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:1..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 7.312e-70
Identity = 118/151 (78.15%), Postives = 134/151 (88.74%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MA SMISSATVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE++YL+R   IPCLEFELE G+VYREH++SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKK 151          

HSP 2 Score: 32.7278 bits (73), Expect = 7.312e-70
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 2
Query:  590 HKRQVQCISFIAAKPPGV 643
            +KRQVQ ISFIA KPPGV
Sbjct:  165 NKRQVQIISFIAYKPPGV 182          

HSP 3 Score: 25.409 bits (54), Expect = 7.312e-70
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  555 YPHSFVRIIGFD 590
            YP +F+RIIGFD
Sbjct:  153 YPSAFIRIIGFD 164          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.585e-69
Identity = 119/151 (78.81%), Postives = 136/151 (90.07%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASSMISSATVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YLI  GWIPCLEFELE  +VYRE+++SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASK 151          

HSP 2 Score: 32.7278 bits (73), Expect = 1.585e-69
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2
Query:  590 HKRQVQCISFIAAKPP 637
            +KRQVQCISFIA KPP
Sbjct:  165 NKRQVQCISFIAYKPP 180          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.585e-69
Identity = 113/147 (76.87%), Postives = 129/147 (87.76%), Query Frame = 1
Query:  115 ISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            ISS+ +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +K+
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKE 150          

HSP 2 Score: 35.039 bits (79), Expect = 1.585e-69
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPGV 643
            RQVQCISFI AKPPGV
Sbjct:  165 RQVQCISFIVAKPPGV 180          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.208e-67
Identity = 114/151 (75.50%), Postives = 130/151 (86.09%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASSM+S+ATVA+ NR S AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMKVWP  G+KKFETLSYLPPL+ E L  E+ YL+RSGWIPCLEFELE G VYREH + PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIK 151          

HSP 2 Score: 31.9574 bits (71), Expect = 3.208e-67
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISF+A KPPG
Sbjct:  167 RQVQCISFLAYKPPG 181          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 7.113e-67
Identity = 118/153 (77.12%), Postives = 136/153 (88.89%), Query Frame = 1
Query:  100 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASSMISS TVAT  A+R + AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKK 152          

HSP 2 Score: 29.6462 bits (65), Expect = 7.113e-67
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  555 YPHSFVRIIGFDT--SVKCSASVSLLPS 632
            YP SF+RIIGFD    V+C + ++  P+
Sbjct:  154 YPQSFIRIIGFDNVRQVQCISFIAYKPA 181          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.276e-67
Identity = 115/151 (76.16%), Postives = 131/151 (86.75%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASSM+S+A VA  NRAS AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YL+R GW+PCLEFELE G VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIK 151          

HSP 2 Score: 28.8758 bits (63), Expect = 9.276e-67
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISF+A KP G
Sbjct:  167 RQVQCISFLAYKPKG 181          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.279e-67
Identity = 111/149 (74.50%), Postives = 132/149 (88.59%), Query Frame = 1
Query:  109 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKD 555
            ++ISSA V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG+VYRE+H+SPGYYDGRYWTMW+LP++G TD++QVLKE+ + + +
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAE 150          

HSP 2 Score: 28.8758 bits (63), Expect = 9.279e-67
Identity = 13/29 (44.83%), Postives = 19/29 (65.52%), Query Frame = 3
Query:  555 YPHSFVRIIGFDT--SVKCSASVSLLPSH 635
            YP SF+RIIGFD    V+C + ++  P +
Sbjct:  151 YPDSFIRIIGFDNVRQVQCISFIAHTPKN 179          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.057e-66
Identity = 118/153 (77.12%), Postives = 136/153 (88.89%), Query Frame = 1
Query:  100 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASSMISS TVAT  A+R + AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKK 152          

HSP 2 Score: 29.6462 bits (65), Expect = 2.057e-66
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  555 YPHSFVRIIGFDT--SVKCSASVSLLPS 632
            YP SF+RIIGFD    V+C + ++  P+
Sbjct:  154 YPQSFIRIIGFDNVRQVQCISFIAYKPA 181          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 4.561e-66
Identity = 114/152 (75.00%), Postives = 136/152 (89.47%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS++SSA VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 150          

HSP 2 Score: 29.6462 bits (65), Expect = 4.561e-66
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISFIA KP G
Sbjct:  166 RQVQCISFIAYKPEG 180          
BLAST of EY705311 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 4.974e-65
Identity = 114/151 (75.50%), Postives = 131/151 (86.75%), Query Frame = 1
Query:  100 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQK 552
            MASS+ISSA VAT  R+++ QASMVAPFTGLKSS+ FP TKK N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K
Sbjct:    1 MASSVISSAAVAT--RSNVTQASMVAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 149          

HSP 2 Score: 29.6462 bits (65), Expect = 4.974e-65
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  596 RQVQCISFIAAKPPG 640
            RQVQCISFIA KP G
Sbjct:  165 RQVQCISFIAYKPEG 179          
The following BLAST results are available for this feature:
BLAST of EY705311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS_BETVE7.312e-7078.15Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR1.585e-6978.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LACSA1.585e-6976.87Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES3.208e-6775.50Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY7.113e-6777.12Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR9.276e-6776.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA9.279e-6774.50Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP2.057e-6677.12Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU4.561e-6675.00Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2A_SOLLC4.974e-6575.50Ribulose bisphosphate carboxylase small chain 2A, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-042-B08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705311 ID=EY705311; Name=EY705311; organism=Citrus sinensis; type=EST; length=944bp
TTTCCGACCCACGCGTCCGATTATATAAACCTACCGCCCACTGAGCATCC
TCCTATTAAGTAAAATAACTTGCAAAGCTAGAAGAAGGATCAAGTACCAA
TGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCC
AGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTC
TTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTG
CAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGC
TTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGC
TTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCT
TGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCA
CCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTA
TGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGA
AGGATACCCACATTCATTCGTCCGAATTATCGGATTTGACACAAGCGTCA
AGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTC
CCAATTAAATTTGTGNTACCACCCATGCAATATTGTTGATTATTATTATG
TGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTA
ATTTGTACTTANGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTTTTCTC
CCGACNNTTGCTNCTTTTTTTTTTTTTTAATATATTTAATAATNGAATCC
TTTGNTTCAGNTNCATAATCTGGGTCTCGGGATGTCAGTTAATGAGTGAG
AATACTGGAATTAAAGAGTAGTTTATGATTCTTGCAAAAAAAAA
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