EY659309

Overview
NameEY659309
Unique NameEY659309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659309 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.202e-13
Identity = 63/203 (31.03%), Postives = 93/203 (45.81%), Query Frame = 3
Query:    3 ESLKTLILSGCLKLKKFPDIVGGMECLQELRLDGIDIKXXXXXXXXXXXXXXXXXN-DCRSLVRLHSNINGLKSLKTLNLSGCFKLENVPETLGQVQSLEKLDISGTAIRQPPSSIFLMKNLKELSCRGCKGSPSSTSWFLRFPINLMRWXXXXXXXXXXXXXXXXXXXXXXDISFCDLWEGSFPIGIGNLCVL-KMDVSEGN 605
            ESL+ L L  C  L+K P+I G M+   ++ + G  I+                   + ++LV L S+I  LKSL +L++SGC KLE++PE +G + +L   D S T I +PPSSI  +  L  L  RG K           FP                            ++S+C+L +G  P  IG+L  L K+D+S  N
Sbjct:  688 ESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGV-----HFEFP----------------PVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNN 869          
BLAST of EY659309 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.578e-11
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 3
Query:    3 ESLKTLILSGCLKLKKFPDIVGGMECLQELRLDGIDIKXXXXXXXXXXXXXXXXXNDCRSLVRLHSNINGLKSLKTLNLSGCFKLENVPETLGQVQSLEKLDISGTAIRQPPSSIFLMKNLKEL 374
            ESL+ L LSGC KL  FP+I   ++   EL + G  I+                  + R L  L ++I  LK L+TLNLSGC  LE  P++  +++ L  LD+S T I++ PSSI  +  L EL
Sbjct: 1328 ESLEVLNLSGCSKLGNFPEISPNVK---ELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDEL 1448          
The following BLAST results are available for this feature:
BLAST of EY659309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TMVRN_NICGU2.202e-1331.03TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
WRK19_ARATH1.578e-1137.90Probable WRKY transcription factor 19 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659309 ID=EY659309; Name=EY659309; organism=Citrus sinensis; type=EST; length=932bp
TGGAATCTCTTAAAACGCTTATTCTATCTGGTTGCTTGAAATTAAAGAAA
TTTCCAGACATTGTAGGAGGTATGGAGTGTCTGCAGGAACTTCGTTTGGA
TGGAATTGATATCAAAGAACTCCCTTTATCTATTGAGCTTTTGACCAGAC
TTGAATTGTTAAATTTGAATGACTGCAGAAGTCTCGTGAGACTTCATAGC
AATATAAATGGTTTGAAATCCCTCAAAACTTTGAATCTCTCAGGCTGCTT
CAAACTTGAAAATGTGCCTGAGACGCTTGGGCAAGTACAAAGTTTGGAAA
AACTTGATATAAGTGGTACAGCTATAAGGCAACCTCCATCGTCGATTTTT
CTTATGAAGAATCTTAAAGAACTATCTTGTCGTGGGTGCAAAGGATCACC
ATCATCTACATCATGGTTTCTGCGCTTCCCTATCAATTTGATGCGATGGA
GTTCAGATCTGGTGGCTTTGAGTTTGCCGTCTTCTCTGTCAGGTTTGCGT
AGCTTAACAACATTGGATATCAGTTTCTGTGATCTATGGGAAGGATCATT
CCCAATTGGTATCGGCAACTTATGCGTATTAAAAATGGATGTTTCTGAGG
GGAACAAATTTTTTTTACGCTGGCGGCAAAGAATTAACCGGATTTCCAAG
CTCTCTGGGCTCTGATTAAAAGGAATGCTAAATGCTTCAAAATCTGCCTT
ACCTGTCAGCCGTTTACATTGGAATCTCTTAAACGGGCGGGGTCTCCCAG
GCAACCCTCCCATATTGGTTAAAAATAAAACAACCAGTATCTCCAACTTT
ATTCTTCAATGCGCGGCTTCCTTTTATTGGGCTCGGCACGTTAGTTTCGC
GGTTTNTTCGTCGCTATAGGCCCTTAAAATTCTGAGCGACCCTGTGCGAC
GGTATCTATTGTGTGTCCCGGGAAGTAACTCC
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