EY659299

Overview
NameEY659299
Unique NameEY659299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659299_ssr81 microsatellite EY659299_ssr81:81..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659299 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 3
Query:   30 FLRILKSHGSDAHLRQIEGGRAIQLVLDQNSRCGFASKSSTCSGV*A*RSSSFLETVLELALHFI*IPYTENVRDELDFEFLGNRTGHPYAGHTYLFAYGKCDCSPRLNLWFGP 371
            F+   K+  S++H+RQ+E G+AIQLVLDQ++ CGFASK     G  + +              F     T  VRDELDFEFLGNR+G PY+  T +FA+GK D   R+NLWF P
Sbjct:   35 FVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDP 148          
BLAST of EY659299 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 52/105 (49.52%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   57 SDAHLRQIEGGRAIQLVLDQNSRCGFASKSSTCSGV*A*RSSSFLETVLELALHFI*IPYTENVRDELDFEFLGNRTGHPYAGHTYLFAYGKCDCSPRLNLWFGP 371
            SD H+ QI+GGRAIQL LD +S CGFASK     G  + +              F     T++VRDELDFEFLGNR+G PY   T +FA+GK D   R+NLWF P
Sbjct:   43 SDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDP 147          

HSP 2 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 2
Query:    8 VLWRPATFLEDFKVTWLRCPSQANRGREGHPASSRPKFTMWVCLQKQYLFGRVSMKIKLVPGDCAGTGTAFYMNS 232
            V+ RPA F +DF++ W         G         P        +KQYLFGRVSMKIKL+PGD AGT TAFYMNS
Sbjct:   27 VMSRPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNS 101          
BLAST of EY659299 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.592e-11
Identity = 23/45 (51.11%), Postives = 28/45 (62.22%), Query Frame = 3
Query:  237 TENVRDELDFEFLGNRTGHPYAGHTYLFAYGKCDCSPRLNLWFGP 371
            T +  DE+DFEFLGN TG PY  HT L+A GK +   +   WF P
Sbjct:   95 TGSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNREQQFRPWFNP 139          

HSP 2 Score: 38.1206 bits (87), Expect = 1.592e-11
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 2
Query:  149 YLFGRVSMKIKLVPGDCAGTGTAFYMNS 232
            +LFG V M IKLVPG+ AGT  A+Y++S
Sbjct:   67 HLFGSVEMLIKLVPGNSAGTVAAYYLSS 94          
BLAST of EY659299 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.594e-11
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 3
Query:  252 DELDFEFLGNRTGHPYAGHTYLFAYGKCDCSPRLNLWFGPCCCF 383
            DE+DFEFLGN +GHPY  HT ++  G  D   + +LWF P   F
Sbjct:  103 DEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDF 146          

HSP 2 Score: 39.2762 bits (90), Expect = 1.594e-11
Identity = 15/30 (50.00%), Postives = 25/30 (83.33%), Query Frame = 2
Query:  143 KQYLFGRVSMKIKLVPGDCAGTGTAFYMNS 232
            +++L+G+V +++KLVPG+ AGT T FY+ S
Sbjct:   68 QEFLYGKVEVQMKLVPGNSAGTVTTFYLKS 97          
BLAST of EY659299 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 3
Query:   66 HLRQIEGGRAIQLVLDQNSRCGFASKSSTCSGV*A*RSSSFLETVLELALHFI*IPYTEN---VRDELDFEFLGNRTGHPYAGHTYLFAYGKCDCSPRLNLWFGP 371
            H++ + GG  + LVLD++S  GF SK S   G      S  L+ V   +   +   Y  +     DE+DFEFLGNRTG PY   T +F  GK D   R+ LWF P
Sbjct:   44 HIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFG----HFSMKLKLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDP 144          
The following BLAST results are available for this feature:
BLAST of EY659299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
XTH6_ARATH8.959e-2046.49Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH3.404e-1949.52Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH26_ARATH1.592e-1151.11Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH1.594e-1150.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_TOBAC7.602e-1140.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659299 ID=EY659299; Name=EY659299; organism=Citrus sinensis; type=EST; length=665bp
CTCTTGCGTTTTATGGCGACCGGCTACTTTTCTTGAGGATTTTAAAGTCA
CATGGCTCCGATGCCCATCTCAGGCAAATCGAGGGAGGGAGGGCCATCCA
GCTAGTTCTAGACCAAAATTCACGATGTGGGTTTGCCTCCAAAAGCAGTA
CTTGTTCGGGCGTGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTGTG
CTGGAACTGGCACTGCATTTTATATGAATTCCATACACCGAAAATGTGAG
AGACGAGCTTGATTTTGAGTTCCTGGGAAACCGAACGGGTCATCCTTACG
CGGGCCACACCTATCTCTTTGCATATGGAAAATGCGATTGCTCACCGAGA
CTGAACCTCTGGTTTGGCCCCTGTTGCTGCTTCTGCCCTTTACACTATCC
TCTGGTTCCTACCCCTATTGGCTTCTTTCCCCCTCCCGGGCCGCTTCGGC
GGTCTCGTTTTCCTCCGGGCCCTCCTCTCCTCTGCCCCGCCCCTGGGCGG
TGGTCTTCCCTGCCGCCTCTCCCCCCCTGGCCCGCCTCGGGCCGTCCCTA
CAAGTCGTCCCTCCCGACGTCCTTTTTGCGTGTTCCTGCCCCTTTTTTCC
TATGTGTTGCGCTTCTCGGTCCCCTCCTCCCGCCCCGCCCTCTTCCCGTC
GCTCTTTGGGTCCTC
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