EY659288

Overview
NameEY659288
Unique NameEY659288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659288 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.144e-25
Identity = 76/190 (40.00%), Postives = 109/190 (57.37%), Query Frame = 2 
Query:   59 IILLWLL--SASMSWGAMHSNN---YQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKL--PTSYFSNFSSQLLAKDFQGVR----AVTDHCEEMMSMSLKRLEKSLLALQNSPTKN--KHDIQTWLGAALTLQQTCKDSVNSLGLSARNDVIKKISHKMDYLSQLTSNPLALV 589
            ++L W+L  +A +   A   N    YQN++Q+ CS T++  LCVQ L  F        +  +S LVNK+I+++ L  P    S  SS+L++ +         +V+D CE +M MS +RL +++ AL  S  K   KHD+QTWL AA+T QQ CKDS+   G S+    I  IS KMD+LS+L SN L LV
Sbjct:    6 MVLFWVLLVNALLIVDASSRNMPFAYQNEMQRHCSSTKYTSLCVQNLREFRHGS-LDGLDFVSFLVNKTISDSNLLIPPLSSSMGSSKLVSLEDSTYTLPSPSVSDSCERLMKMSTRRLRQAMEALNGSSRKRHTKHDVQTWLSAAMTFQQACKDSILDSGGSSSASAISHISQKMDHLSRLVSNSLTLV 194
The following BLAST results are available for this feature:
BLAST of EY659288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PME54_ARATH7.144e-2540.00Probable pectinesterase/pectinesterase inhibitor 5... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-E02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659288 ID=EY659288; Name=EY659288; organism=Citrus sinensis; type=EST; length=920bp
AATTTATTTTGGTGATCGATCAAAATCTTATCATATGGAAACTCCTCCAT
GGTTTACAATAATATTGCTTTGGCTCTTGAGTGCCTCCATGTCATGGGGT
GCCATGCATAGTAACAATTACCAAAACAAAATTCAGAAAGAGTGCAGCTT
CACTAGATTCCCAATCCTTTGTGTCCAGACATTGATGGGGTTTGAGAGTA
CAAAACATCAACAACACATCCATCTTATGTCTGCTCTCGTTAACAAAAGC
ATTGCTGAAACCAAGCTGCCTACTTCATATTTTTCTAATTTCAGCTCCCA
GTTACTTGCCAAAGATTTCCAAGGTGTACGTGCTGTCACAGATCACTGCG
AAGAGATGATGAGTATGTCACTCAAACGGCTAGAGAAGTCACTATTAGCC
CTACAAAATTCCCCAACAAAAAACAAGCATGACATCCAAACGTGGCTCGG
CGCTGCGTTGACTCTCCAGCAAACTTGTAAAGACTCTGTGAATAGCCTCG
GTCTCTCAGCGAGAAATGATGTTATCAAAAAAATATCTCACAAAATGGAT
TATTTGTCTCAACTGACCAGTAATCCTTTAGCCCTTGTCACAGGATAGAC
AGGGCTAGTTACCCAAAGAACAGCACATATATTCGGCGTCTAGATGAGGA
ACAAGGTGATTTTCCCATCTGGGTATCGGCGAAAAATANGATACTGGTGC
AGGCCCCGCGCATAATGCACATGGGATTGTTGCTCATGATGGAACTGGCA
TTATTGAACTGGTTCGGAAGCTATAGCGCTGCGTCTGGAAATCGGTTTGG
AATTATGGAATGGAGGTGGTTATATGGAAATATTCGACTAACAGGACNGG
TTACCTTGGTGGACATGGGAAACCACACTTCATTACTGTGAAGATATGCT
CCAAAGGCCTTCCTGCCTGG
back to top