EY659262

Overview
NameEY659262
Unique NameEY659262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7549 contig Csv1_Contig7549:38..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: PR40A_HUMAN (Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.639e-18
Identity = 53/133 (39.85%), Postives = 74/133 (55.64%), Query Frame = 3
Query:   54 PMSQMH-VPSNPAGGQLGVSISQSTSTPLQH---TNEQVAANTASTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 440
            PM QM  + S+   G +   +SQ++  P       +  VAA TAS             A++ W EH + DGR YYYN  T+QSTW+KP +L TP E+  +   WKE+ S  G+ YYYN  TK+S+W+ P EL+
Sbjct:   96 PMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASG------------AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELE 216          
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: PR40A_MOUSE (Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.652e-18
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 3
Query:   54 PMSQMH-VPSNPAGGQLGVSISQSTSTPLQH---TNEQVAANTASTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELK 440
            PM QM  + S+   G +   +SQ++  P       +  VAA  AS             A++ W EH + DGR YYYN  T+QSTW+KP +L TP E+  +   WKE+ S  G+ YYYN  TK+S+W+ P EL+
Sbjct:   96 PMGQMPGMMSSVMSGMMMSHMSQASMQPALPPGVNSMDVAAGAASG------------AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELE 216          
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: PRP40_SCHPO (Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe GN=prp40 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.534e-16
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  207 AEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLA-----REQAERASTKGTQSEASPNLQT 512
            ++   +DW E    D R YYYN  TR+S W+KP ELM   E+  +   WKE+ + DG+KY+YN  T++S W IPDE K A      +Q +  S+K   ++  P +Q+
Sbjct:   29 SKTVASDWHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYNVNTRESVWDIPDEYKAALVDEPEQQKKALSSKIKSNDNKPAVQS 135          
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: YO61_CAEEL (WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans GN=ZK1098.1 PE=4 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.419e-15
Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  204 SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAA----SDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGT 482
            S+   ++DW  HT   G  YY+N+ T+Q++W KP  L TP+ER+ +       WKEF S DG+ YYYN +TK+++W  PD  ++ + + + A+   T
Sbjct:   76 SSPSVESDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERSTSGQPQQGQWKEFMSDDGKPYYYNTLTKKTQWVKPDGEEITKGEQKPAAKAAT 172          
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: PR40B_MOUSE (Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.127e-14
Identity = 42/134 (31.34%), Postives = 64/134 (47.76%), Query Frame = 3
Query:  126 STPLQHTNEQVAANTASTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVP 527
            + P+       A   +S +A T  P++       W EH A DGR YYYN   +QS W+KP  L +  E   +   WKE+ S  G+ YYYN  +++S+W+ P +L       ++ S    Q++    LQ     P
Sbjct:   70 AVPVTAATAPGADTASSAVAGTGPPRAL------WSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDLDDLEALVKQESAGKQQTQQLQTLQPQPPQP 197          
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: PR40B_HUMAN (Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.127e-14
Identity = 42/134 (31.34%), Postives = 63/134 (47.01%), Query Frame = 3
Query:  126 STPLQHTNEQVAANTASTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVP 527
            + P+       A   +S +A T  P++       W EH A DGR YYYN   +QS W+KP  L +  E   +   WKE+ S  G+ YYYN  +K+S+W+ P +L       ++ +    Q +    LQ     P
Sbjct:   70 AVPVTAATAPGADTASSAVAGTGPPRAL------WSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEVLVKQEAAGKQQQQLPQTLQPQPPQP 197          
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: PRP40_YEAST (Pre-mRNA-processing protein PRP40 OS=Saccharomyces cerevisiae GN=PRP40 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.712e-12
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 3
Query:  228 WIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPN 503
            W E   A GR YYYN  T++STW+KP EL++  E     + WK   + DG+ YYYN  T+++ W+IP   K     AE+     + ++ + N
Sbjct:    4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAFEKKVEPIAEQKHDTVSHAQVNGN 95          
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: WBP4_RAT (WW domain-binding protein 4 OS=Rattus norvegicus GN=Wbp4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11
Identity = 45/152 (29.61%), Postives = 69/152 (45.39%), Query Frame = 3
Query:  111 ISQSTSTPLQHTNEQVAANTASTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDEL------KLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTAS 548
            IS+ T +P+ +T  Q             + K  E ++  W+E   ADG  YYY+  T  S W+KP      +++  A + W E  S DG  YYYN  T +SKW  PD+        L+ + +E+       S++S +   S+     A  AS
Sbjct:   89 ISEPTISPVTNT-VQPTPTANQQKEKKKKKKKKEASKGRWVEGVTADGHCYYYDLVTGASQWEKPEGFQGNLKKTAAKAIWVEGLSEDGYTYYYNTETGESKWEKPDDFIPHGGDVLSSKDSEKLPDTLEDSKSSDSHSDSDDEQKKAGEAS 239          
BLAST of EY659262 vs. ExPASy Swiss-Prot
Match: WBP4_MOUSE (WW domain-binding protein 4 OS=Mus musculus GN=Wbp4 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 36/107 (33.64%), Postives = 51/107 (47.66%), Query Frame = 3
Query:  156 VAANTASTMASTFQP--------------KSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDE 434
            ++  T S + ST QP              K  E ++  W+E   ADG  YYY+  T  S W+KP      +++  A + W E  S DG  YYYN  T +SKW  P++
Sbjct:   91 ISEPTVSPVISTVQPTPTSNQQKEKKKKKKKKEASKGGWVEGVTADGHCYYYDLITGASQWEKPKGFQGNLKKTAAKAVWVEGLSEDGYTYYYNTETGESKWEKPED 197          
The following BLAST results are available for this feature:
BLAST of EY659262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PR40A_HUMAN1.639e-1839.85Pre-mRNA-processing factor 40 homolog A OS=Homo sa... [more]
PR40A_MOUSE3.652e-1839.10Pre-mRNA-processing factor 40 homolog A OS=Mus mus... [more]
PRP40_SCHPO1.534e-1639.25Pre-mRNA-processing protein prp40 OS=Schizosacchar... [more]
YO61_CAEEL8.419e-1538.14WW domain-containing protein ZK1098.1 OS=Caenorhab... [more]
PR40B_MOUSE7.127e-1431.34Pre-mRNA-processing factor 40 homolog B OS=Mus mus... [more]
PR40B_HUMAN7.127e-1431.34Pre-mRNA-processing factor 40 homolog B OS=Homo sa... [more]
PRP40_YEAST8.712e-1236.96Pre-mRNA-processing protein PRP40 OS=Saccharomyces... [more]
WBP4_RAT3.311e-1129.61WW domain-binding protein 4 OS=Rattus norvegicus G... [more]
WBP4_MOUSE9.632e-1133.64WW domain-binding protein 4 OS=Mus musculus GN=Wbp... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-B09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659262 ID=EY659262; Name=EY659262; organism=Citrus sinensis; type=EST; length=894bp
CATATGGCCAACCACAAGGAACCGTTAATGTCAATACTGGGAATCAGTAT
CAGCCCATGTCCCAAATGCATGTTCCCAGTAATCCTGCTGGAGGACAACT
TGGTGTGTCCATTAGCCAGAGTACCAGTACACCTCTGCAGCACACCAATG
AACAAGTGGCTGCTAACACTGCCTCCACTATGGCATCTACTTTTCAGCCT
AAGTCTGCAGAAGTGGCCCAAACTGATTGGATAGAGCATACTGCTGCTGA
CGGAAGAAGATATTATTACAACAAGAGGACAAGACAATCTACTTGGGATA
AACCTTTGGAATTAATGACACCAATTGAGAGGGCCGATGCAGCGTCTGAC
TGGAAGGAATTTACAAGTCCTGATGGAAGAAAGTATTACTACAACAAGGT
TACCAAGCAGTCAAAGTGGTCAATACCTGATGAGTTGAAGTTGGCCCGTG
AACAAGCAGAAAGAGCATCTACCAAAGGAACACAGTCAGAAGCATCCCCT
AATTTGCAAACATCAAATTCTGTTCCTTCGTCAGCGGTTACAGCATCACC
TAATGCTGATATCTCATCTTCAACAGTTCAAGTGGTAGCATCAAGCCCAG
TTTCAGTGGTTCCTATAATTGCTGCCAGCAGTATACAACCTGCAATGGTC
TCTGCATCTTCAGCCTCACCTGTCATTGCTTCGTCTGTGGCAGTGAGTGC
AGATGGAATCCAGACAACTGTAGATGCTCTTACACCAATGACTTCTGTAT
CTTNCAGTGTAGGAGATGCTGNTACTGTCAATACGGATACCGAAACCAAG
AATTATTCNAAGCACTTGTCAGCTTCTTATGGTGTTGCTGCCGCAGNTGA
AGTCCCTGCACAAGAGACAGAGGAATGCGGAANGAAGCTGTCAC
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