EY659170

Overview
NameEY659170
Unique NameEY659170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7463 contig Csv1_Contig7463:1..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659170 vs. ExPASy Swiss-Prot
Match: C2D61_ARATH (C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.565e-14
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  283 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP----DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 600
            + EA DL  +DL G +DPYVK + G  + +TK+  KTL+P+WH+  + P    D  S L + V D +  +   ++G+C V  +     Q  D W+ LQ ++ G +H+ IT
Sbjct:  288 VFEASDLKPSDLNGLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILNIEVGDKDRFV-DDTLGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAIT 396          
The following BLAST results are available for this feature:
BLAST of EY659170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C2D61_ARATH9.565e-1435.45C2 domain-containing protein At1g53590 OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659170 ID=EY659170; Name=EY659170; organism=Citrus sinensis; type=EST; length=906bp
AATCATGTCTGGAATCAGAAGTTTGAGCTTGACGAGATAGGTGGTGGTGA
ATGCCTTATGGTAAAATGCTACAATGAAGAAATATTTGGAGATGAAAACA
TGGGTAGTGCACGAGTAAATTTGGAAGGGCTTGTAGAAGGGTCAGTTAGA
GATATATGGGTCCCCCTTGAAAAAGTAAATACAGGAGAACTAAGGCTTCA
AATAGAAGCTGTGAGAGTTGATGACAACGAAGGATCAAGGGGTCAAAACA
TAGGTTCTGGCAATGGCTGGATTGAACTTGTTATTGTTGAAGCGAGAGAC
CTCGTTGCTGCTGATCTCAGGGGAACAAGTGATCCATATGTTAAAGTGCA
GTATGGAGACTTGAAGAAGAGAACAAAGGTCATATTCAAAACTCTAAATC
CTCAATGGCATCAAACCTTAGAGTTCCCTGATGATGGCAGTCCCCTGACA
CTGCATGTGAGAGACCACAATGCATTACTGGCTTCATCAAGTATCGGTGA
TTGTGTTGTTGAATATCAGAGATTGCCTCCAAATCAGATGGCTGACAAGT
GGATACCTCTCCAAGGAGTGAGAAAGGGGGAAATTCACGTTCTAATAACA
AGAAAAGTTCCAGAACTAGATAAGAGAACCAGTATGGATTCCGATTCATC
TTCAACTAGAGCACACAAAATTTCTAGCCAGATGAAACAAATGATGGTCA
AATTTCAATCATTGATCGATGATGACAATCTGGAAGAGCTTTCAACTGCT
TTGAGCGAGCTGGNAACTCTTGAAGACTCACAAGAGAGTACATGGTACAG
CTCGAAANCTGACAGATGCTTCTACTTAACAAGATAAAGAACTTGGTCAN
GNAAATATTACTCATCACCTTCATTNNATAGAGATCTNCTGGGAATGGAC
CATACT
back to top