EY659157

Overview
NameEY659157
Unique NameEY659157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7461 contig Csv1_Contig7461:1..944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659157 vs. ExPASy Swiss-Prot
Match: BRE1B_ARATH (E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 7.838e-52
Identity = 85/178 (47.75%), Postives = 121/178 (67.98%), Query Frame = 1
Query:    4 GVRAGGGSNVLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHXXXXXXXXXXXXXXSRRKLVSLKMQK 537
            GVRAG     L  LD  ++ R  +P    ++ FLCRLLQV+S+++S  D +++ VEEALA RHSS  ELM   E  ID Q+ K +SI+++ H   S EDA IQLS I+D+MKEE+KNL E+++ +H++HKE+++QI+ YISSHS DQ+E++H              +RRKL++LKMQK
Sbjct:  122 GVRAGANQEALNYLDIVDKKR--VPPCAADETFLCRLLQVDSLDTSKSDEVVRKVEEALALRHSSTMELMGLFENTIDTQKTKAESISQSLHAVKSTEDATIQLSSINDLMKEESKNLREMIDALHVRHKEHSEQIQAYISSHSTDQSELKHLKGQLEEIKAELEENRRKLITLKMQK 297          

HSP 2 Score: 41.2022 bits (95), Expect = 7.838e-52
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 3
Query:  525 KDAKDIASGTHSLVPAAAMVNGSVSPEKMPADGMMDLQELNDSVEEA*ILAADRLFEVERAQ 710
            K  KD A   H   PA A  NGS+SPEK P D    L+EL DS++E  I+A  RL E++ +Q
Sbjct:  294 KMQKDAACEGHVTSPAIA--NGSLSPEK-PVD-KTKLRELKDSIDEIKIMAEGRLSELQASQ 351          

HSP 3 Score: 35.8094 bits (81), Expect = 7.838e-52
Identity = 14/24 (58.33%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  725 LSKQLENLQNELDDXQYVHSSRLY 796
            LS+Q ++++NEL D QY++SSRLY
Sbjct:  357 LSRQCQDIENELKDDQYIYSSRLY 380          

HSP 4 Score: 21.1718 bits (43), Expect = 7.838e-52
Identity = 6/12 (50.00%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  799 LVNDQLQHWMXE 834
            L+ND++ HW  E
Sbjct:  382 LINDRIHHWNAE 393          
BLAST of EY659157 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.581e-34
Identity = 63/177 (35.59%), Postives = 103/177 (58.19%), Query Frame = 1
Query:    4 GVRAGGGSNVLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHXXXXXXXXXXXXXXSRRKLVSLKMQ 534
            GVRAGG  N LQ LD E  + +S+ S P E++FL RLL   +  ++    + + VEEALA R+S+   LMK ++E    Q+ +++S++ A + + S+ED I+ L   +D +KE   NL + + II+ KH++Y D+IE + ++ S +  E++               SRRKL  L++Q
Sbjct:   63 GVRAGGDLNGLQALDHEEMSEESLESCPSEEIFLFRLLNSRNFRNNDDSSLSKLVEEALALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNSSEDVIVALENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQ 239          

HSP 2 Score: 41.9726 bits (97), Expect = 8.581e-34
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 3
Query:  540 IASGTHSLVPAAAM--VNGSVSPEKMPADGMMDLQELNDSVEEA*ILAADRLFEVERAQXD 716
            + +G  SL+  +A   VNGSVS +K    GM   ++L D+VEEA  LAA+RLFE+   Q D
Sbjct:  238 LQTGGGSLMNTSAPNGVNGSVSTDKSSDKGM-GWRDLKDAVEEAKTLAANRLFELHETQED 297          

HSP 3 Score: 29.261 bits (64), Expect = 8.581e-34
Identity = 12/24 (50.00%), Postives = 19/24 (79.17%), Query Frame = 2
Query:  725 LSKQLENLQNELDDXQYVHSSRLY 796
            LSKQLE++Q++L D  Y+ +S+ Y
Sbjct:  301 LSKQLEDIQDQLKDENYIVTSKPY 324          
BLAST of EY659157 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSI (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 8.581e-34
Identity = 63/177 (35.59%), Postives = 103/177 (58.19%), Query Frame = 1
Query:    4 GVRAGGGSNVLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHXXXXXXXXXXXXXXSRRKLVSLKMQ 534
            GVRAGG  N LQ LD E  + +S+ S P E++FL RLL   +  ++    + + VEEALA R+S+   LMK ++E    Q+ +++S++ A + + S+ED I+ L   +D +KE   NL + + II+ KH++Y D+IE + ++ S +  E++               SRRKL  L++Q
Sbjct:   63 GVRAGGDLNGLQALDHEEMSEESLESCPSEEIFLFRLLNSRNFRNNDDSSLSKLVEEALALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNSSEDVIVALENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQ 239          

HSP 2 Score: 41.9726 bits (97), Expect = 8.581e-34
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 3
Query:  540 IASGTHSLVPAAAM--VNGSVSPEKMPADGMMDLQELNDSVEEA*ILAADRLFEVERAQXD 716
            + +G  SL+  +A   VNGSVS +K    GM   ++L D+VEEA  LAA+RLFE+   Q D
Sbjct:  238 LQTGGGSLMNTSAPNGVNGSVSTDKSSDKGM-GWRDLKDAVEEAKTLAANRLFELHETQED 297          

HSP 3 Score: 29.261 bits (64), Expect = 8.581e-34
Identity = 12/24 (50.00%), Postives = 19/24 (79.17%), Query Frame = 2
Query:  725 LSKQLENLQNELDDXQYVHSSRLY 796
            LSKQLE++Q++L D  Y+ +S+ Y
Sbjct:  301 LSKQLEDIQDQLKDENYIVTSKPY 324          
The following BLAST results are available for this feature:
BLAST of EY659157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BRE1B_ARATH7.838e-5247.75E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabido... [more]
BRE1B_ORYSJ8.581e-3435.59E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza s... [more]
BRE1B_ORYSI8.581e-3435.59E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza s... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-A06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659157 ID=EY659157; Name=EY659157; organism=Citrus sinensis; type=EST; length=942bp
GGTGGAGTACGGGCTGGGGGAGGATCAAATGTTTTACAAAAGTTGGATTC
TGAAAACCAGACACGAGATTCAATTCCATCTGGTCCTCCAGAGGATATGT
TTCTCTGTAGACTACTTCAAGTGAATTCCATTGAGAGCAGTAGCAAAGAT
GGAATACTCCAATATGTTGAAGAGGCCCTTGCCTCACGTCACTCATCTGC
TAGGGAGTTGATGAAATTTATTGAAGAAGTCATTGATGCTCAGAGAGTGA
AAACTAAGAGCATAGCTGAGGCTTTCCATGAAAAGCTATCTGCAGAAGAT
GCCATTATCCAGCTGTCTAAGATTGATGATATGATGAAAGAAGAGGCTAA
AAATCTGCATGAGGTGATGGAGATTATCCACTTGAAGCATAAGGAATATG
CTGATCAAATTGAGAATTACATAAGCAGTCATTCGGTTGATCAAGCTGAG
ATTCAACACCTTGCAGGTGAACTTGAAGAGACCATGGCTGAACTTGAGGA
AAGTAGAAGAAAACTGGTCAGTCTAAAGATGCAAAAGATATAGCATCCGG
TACGCATTCACTGGTTCCAGCTGCTGCTATGGTAAATGGAAGTGTATCGC
CAGAGAAGATGCCTGCTGATGGGATGATGGATTTGCAAGAATTGAATGAT
TCTGTCGAGGAAGCATAGATACTGGCAGCAGACCGTCTTTTCGAGGTTGA
AAGAGCACAGNCAGACCCATATAACTGTCAAAACAATTAGAGAATCTTCA
GAATGAGCTNGATGACNGACAATATGTACACTCATCTCGATTGTATATTT
AGTAAATGATCAACTCCAGCATTGGATGNNTGAGTAGAACGATCCAAGCA
TTGACAGATTNCTTGCTGNATGACAGTCTCTTGTTTGAGAGAAGAAATGG
AATAATGTANANCAAAGTCGGCAGTGCTGCAGGAACACCGTG
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