EY659140

Overview
NameEY659140
Unique NameEY659140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1881 contig Csv1_Contig1881:32..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RK28_ARATH (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana GN=RPL28 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.210e-51
Identity = 108/154 (70.13%), Postives = 122/154 (79.22%), Query Frame = 2
Query:   41 MATMATPGGVLLGNTSNLPFRRPRLSPKSMVKAVSSSEELGFVTSQLSGIKISYSLPDVATPISSRPFAPGLQPIVARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 502
            M TMAT G  L          R   S KSM K+  +S+ELGF+TSQLSG++ISY+  DV   IS   F PG+QPIVARR+CPFTGKK+N+ANKVSFSNHKT K QFVNLQYK+VWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct:    1 MTTMATQGAWL----------RMTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVINRISLPSF-PGIQPIVARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKK 143          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RK28_TOBAC (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.894e-43
Identity = 97/154 (62.99%), Postives = 113/154 (73.38%), Query Frame = 2
Query:   41 MATMATPGGVLLGNTSNLPFRRPRLSPKSMVKAVSSSEELGFVTSQLSGIKISYSLPDVATPISSRPFAPGLQPIVARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 502
            MATM    G+ L        R   ++ ++ +     S EL FVTSQLSG+KIS +    ++   S PF P LQP VARR+CPFTGKKSN+ANKVS SNHKT K QFVNLQYK++WWEAGKRYVKLRLSTKA+KTIEKNGLDAVAKKAGIDL K+
Sbjct:    1 MATMVA--GISLRGPVMSSHRTFSVTKRASLPQSKLSSELSFVTSQLSGLKISSTHFISSSAPLSVPFKPSLQP-VARRICPFTGKKSNRANKVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSKK 151          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_THEEB (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmB PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.635e-20
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TGKK+N A  +S S+ +T K Q VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Sbjct:    3 RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERKGLSAFAKEAGLDLNK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_CYAP4 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpmB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.495e-20
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TGK++N A  VS S+ +T K Q VNLQ+K++WW  GKR+V+LRLSTKALKT+E  GLD+ A++AGIDL K
Sbjct:    3 RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHKGLDSFAREAGIDLNK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_SYNP2 (50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpmB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.308e-19
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            R C  TGKK+N A  VS S+ +T K Q VNLQ+K+VWW  G R+V+LRLSTKA+KT+EK G+DA+A++AGI+L K
Sbjct:    3 RKCQITGKKANNAMAVSHSHRRTKKLQEVNLQWKRVWWPEGNRFVRLRLSTKAIKTLEKKGIDAMAREAGINLNK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_CYAP7 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7424) GN=rpmB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.970e-19
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            R C  TGKK+N A  +S S+ +T + Q  NLQ+K++WWE GKR+VKLRLSTKA+KT+EK GL ++AK+AGI+L +
Sbjct:    3 RHCELTGKKANNAFSISHSHRRTKRLQHANLQWKRIWWEEGKRWVKLRLSTKAIKTLEKKGLASMAKEAGINLNQ 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_SYNP6 (50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.889e-18
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TGKK+N A  +S S+ +T + Q VNLQ K++WW  G R+VKLRLSTKA+KT++K GL A A++ GIDL++
Sbjct:    3 RVCQLTGKKANNAYAISHSHRRTKRLQNVNLQEKRIWWPEGNRFVKLRLSTKAIKTLQKKGLSAYARELGIDLKR 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_SYNE7 (50S ribosomal protein L28 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.889e-18
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TGKK+N A  +S S+ +T + Q VNLQ K++WW  G R+VKLRLSTKA+KT++K GL A A++ GIDL++
Sbjct:    3 RVCQLTGKKANNAYAISHSHRRTKRLQNVNLQEKRIWWPEGNRFVKLRLSTKAIKTLQKKGLSAYARELGIDLKR 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_TRIEI (50S ribosomal protein L28 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.467e-18
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            R C  TGKK+N    VS S+ +T K Q  NLQ+KKVWW  GK++VKL+LSTKA+KT++  G+ A+AK+AGIDL K
Sbjct:    3 RKCQLTGKKANNGYSVSHSHIRTHKLQHANLQWKKVWWPQGKKWVKLKLSTKAIKTLQSKGIQAMAKQAGIDLNK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_CYAP8 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 8801) GN=rpmB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.373e-18
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            R C  TGKK+N A  VS S+ +T K Q  NLQ+K+VWW  G R+V+LRLSTKA+KT+E  GL  +AK+AGI+L K
Sbjct:    3 RKCQLTGKKANNAYAVSHSHRRTKKLQEANLQWKRVWWPEGNRWVRLRLSTKAIKTLETKGLSVMAKEAGINLNK 77          
The following BLAST results are available for this feature:
BLAST of EY659140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RK28_ARATH2.210e-5170.1350S ribosomal protein L28, chloroplastic OS=Arabid... [more]
RK28_TOBAC2.894e-4362.9950S ribosomal protein L28, chloroplastic OS=Nicoti... [more]
RL28_THEEB2.635e-2061.3350S ribosomal protein L28 OS=Thermosynechococcus e... [more]
RL28_CYAP44.495e-2061.3350S ribosomal protein L28 OS=Cyanothece sp. (strai... [more]
RL28_SYNP21.308e-1960.0050S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_CYAP74.970e-1957.3350S ribosomal protein L28 OS=Cyanothece sp. (strai... [more]
RL28_SYNP61.889e-1856.0050S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_SYNE71.889e-1856.0050S ribosomal protein L28 OS=Synechococcus elongat... [more]
RL28_TRIEI2.467e-1857.3350S ribosomal protein L28 OS=Trichodesmium erythra... [more]
RL28_CYAP89.373e-1857.3350S ribosomal protein L28 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659140 ID=EY659140; Name=EY659140; organism=Citrus sinensis; type=EST; length=823bp
CCACGCGTCCGATAACAAAATACACAGGGAATCGAAAAGAATGGCAACAA
TGGCGACACCGGGAGGAGTTTTATTGGGAAACACTTCCAATCTACCCTTT
CGCCGCCCACGTCTGTCTCCGAAGTCCATGGTTAAGGCAGTCTCCTCCTC
GGAAGAACTGGGTTTCGTTACTTCACAACTCAGTGGCATCAAAATTTCGT
ACAGCCTACCTGACGTGGCCACACCCATTTCCTCTCGTCCTTTCGCCCCG
GGTCTTCAACCTATTGTTGCGCGTAGAGTGTGCCCCTTCACTGGAAAGAA
ATCAAACAAGGCAAACAAAGTTTCCTTCTCTAACCACAAGACAACTAAGC
GGCAGTTTGTTAACCTACAGTATAAGAAGGTTTGGTGGGAGGCCGGCAAG
CGTTATGTGAAGCTGCGTTTGTCAACAAAGGCATTAAAGACGATAGAGAA
AAATGGATTGGATGCTGTTGCTAAGAAGGCTGGAATAGATCTTCGCAAGG
AATGATATAGATGGTCTAACTATTTTTACCTATAGCTGTTGGTAAAGCTT
GTATGCTTACTGTTTCTCTCGAAATTTAATTTCATGTTGCACTGTATCTT
CTTTTTGCTTGTTCTGTTGAATTCTTTGTTCTGTTGAATTCTTCCCAATT
AAATGAGAATACTGATCATTAAAGCCTCAAGGTTTTTGTTAGTTCATTTT
TGCATGTCGTCATGAGGCTTTGCGTTGATGGCTCTATGAGCATTCAGCGC
GTGTTGTATGATCTTCTATNCGAAGAAGAGAATTGTAAATACAGAACAGC
ATTTTTGCTGAAAAAAAAAAAAA
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