EY659108

Overview
NameEY659108
Unique NameEY659108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659108_ssr377 microsatellite EY659108_ssr377:377..388. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY659108 vs. ExPASy Swiss-Prot
Match: PLSP1_ARATH (Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 1.139e-13
Identity = 39/109 (35.78%), Postives = 51/109 (46.79%), Query Frame = 2 
Query:  239 NPNFVNFQHQN----PRPLN---PKNLLYR-LNCNKLKSSGEETKSVVNTXXXXXXXXXXXXXXXXXXXXXXXXXXALPGWLNITSDDAKTVLAALVISLAFRSFVAEP 541
            NPNF+ F  ++    P+ LN     NL  R L+C  +K S E TKS  +                             P WL+ TSDDA+TV  A+ +SLAFR F+AEP
Sbjct:   30 NPNFIQFTPKSQLLFPQRLNFNTGTNLNRRTLSCYGIKDSSETTKSAPSLDSGDGGGGDGGDDDKGEVEEKNRL---FPEWLDFTSDDAQTVFVAIAVSLAFRYFIAEP 135

HSP 2 Score: 45.0542 bits (105), Expect = 1.139e-13
Identity = 21/34 (61.76%), Postives = 23/34 (67.65%), Query Frame = 1 
Query:  517 FSVVCGRARYIPSLSMYPTFDVEDRIXAEKVXXF 618
            F       RYIPSLSMYPTFDV DR+ AEKV  +
Sbjct:  128 FRYFIAEPRYIPSLSMYPTFDVGDRLVAEKVSYY 161
The following BLAST results are available for this feature:
BLAST of EY659108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PLSP1_ARATH1.139e-1335.78Chloroplast processing peptidase OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659108 ID=EY659108; Name=EY659108; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGAGCGTTGAGTGGAGATGATGATATCTCTAAATCTCCTAC
CTACGCTGCCTTCCCTTCAGAACCCTAATTTCACTTCTACCCAATCTTCC
AACCCTCTCAAAAACCCTAATTTTGCTGCAAAACCTTTTTCCAAGTCCCT
CAAAAACCCTTATTTCACAATCCTCAACCTGCACCCAAAATCAAACCCAC
CCCAGTTTTCACGCACCCGTTGGCCCTTTGTCTCTATAAATCCCAACTTT
GTTAACTTTCAGCACCAAAATCCTAGGCCCTTGAACCCCAAAAATTTACT
TTACAGACTGAACTGTAATAAATTGAAAAGCTCCGGGGAAGAGACCAAAT
CAGTTGTTAATACTGGTAGTGGTGGAGGCGGCGGCGGCGACGGCGGAGGT
GGTGACGGTAGCGATGATGAAGAGGCGGAGGGGCAAAGTGGGGCATTGCC
AGGATGGTTGAATATCACTTCTGATGATGCAAAAACAGTTTTGGCGGCGC
TGGTTATTTCACTTGCTTTTCGGTCGTTTGTGGCCGAGCCAGGTACATTC
CTTCGTTGTCGATGTATCCTACGTTTGATGTNGAAGATCGAATTGNTGCA
GAAAAGGTAGNCGNTTTTGTTGATCTAGGGTAATTATCTTATTTTCTTTT
ATAATNGCTATGAGACTGTCTTTGGATGCTTAATTGAACAAAGTGATTGN
TGACTTTGATATGCTGATATATAAATCTACCGTGAGAGGNTGATACAATT
ATGTGCCTTGTGTTTTTGGGTNCGGAACTAAAGAAGATCAGCTCAGATAT
ACAGTGATTACTGATTGGGGCTCATTTATCTGCTCATTGACATTGAATTG
GAGCTCATAGGGCTGAGAAATTTGTGATGCTGAACATGCATATTGCAGGC
AAATGCTANTAAAAGA
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