EY659102

Overview
NameEY659102
Unique NameEY659102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13851 contig Csv1_Contig13851:406..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 68/150 (45.33%), Postives = 85/150 (56.67%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 436
            MV AVAV++ + G  GT+ FS EG GPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L NITV  +G A+F I  K IPL+G NSVIGR +VVH  P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 66/150 (44.00%), Postives = 86/150 (57.33%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 436
            MV AV V++ + G  GTV F+ EGSGPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L NITV  +G ATF I  + IPL+G NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGL 150          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.628e-24
Identity = 62/129 (48.06%), Postives = 80/129 (62.02%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            MV AVAV+TG+ G +GTV F+ EG GPTT+ GSLSGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G   F +  + IPL+G NSV+GR +VVH+  S D G G
Sbjct:    1 MVKAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHAD-SDDLGKG 128          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 66/150 (44.00%), Postives = 85/150 (56.67%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 436
            MV AVAV++ +N   GT++FS EG+GPTTV G+L+GL PG H   IH  G+ +N  ISTGP F P G +           G L NI V  +G  +F I    IPL+GTNS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 65/150 (43.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 436
            MV AVAV+  + G KGT+ F+ EG GPTTV GS+SGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G     I  + IPLSG+NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 59/129 (45.74%), Postives = 78/129 (60.47%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            MV  VAV++ + G  GT+ F+ EG GPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G A F I  K IPL+G +S+IGR +VVH+ P  D G G
Sbjct:    1 MVKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPD-DLGKG 128          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 62/150 (41.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 436
            MV AVAV+  + G KGT+ FS EG GPT+V GS+SGL PG H   +H  G+ +N  +STGP F P G +           G L NIT  ++G+A   +  + IPL+G +S+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 61/150 (40.67%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 436
            MV AVAV+  + G KGT+ F+ EG GPTTV GS+SGL PG H   +H  G+ +N  +STGP + PA  +           G L N+T  ++G+A   +  + IPL+G NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22
Identity = 63/150 (42.00%), Postives = 83/150 (55.33%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 436
            M  AV V++ + G  GTV F+ EG GPTTV G++SGL PG H   +H  G+ +N  +STGP + P G +           G L NITV  +G ATF I  + IPLSG NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MGKAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of EY659102 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 58/129 (44.96%), Postives = 78/129 (60.47%), Query Frame = 2
Query:   62 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 412
            MV AVAV+  + G  GT+ F+ +G+ PTTV G++SGL PG H   +H  G+ +N  +STGP + PAG +           G L NITV  +G A+F I  K IPL+G  S+IGR +VVH+ P  D G G
Sbjct:    1 MVKAVAVLNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPD-DLGKG 128          
The following BLAST results are available for this feature:
BLAST of EY659102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SODC_IPOBA3.873e-2445.33Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC1_MESCR5.058e-2444.00Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_ZANAE8.628e-2448.06Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_PEA4.282e-2344.00Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_ANACO4.282e-2343.33Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC_PAUKA7.304e-2345.74Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC2_ORYSJ3.625e-2241.33Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC4_MAIZE6.183e-2240.67Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_SPIOL8.075e-2242.00Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC2_SOLLC1.055e-2144.96Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-D09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659102 ID=EY659102; Name=EY659102; organism=Citrus sinensis; type=EST; length=699bp
CCACGCGTCCGTCCATCTTCATTTTCCTCTCTCTAAGGGCGTTGTGATAT
CACACAGCACAATGGTGAATGCAGTTGCAGTTATTACTGGAACTAACGGT
CGCAAGGGAACTGTTTCCTTTAGCGTTGAAGGAAGTGGTCCAACAACTGT
GAAAGGAAGCCTCTCTGGTTTGCCGCCTGGTGATCACGCACTCATTATTC
ACACTTACGGAAACATAAGCAATGATTGGATATCAACTGGACCCCCTTTT
AAACCTGCTGGAGCTGACGGTTTTTTAGAAAACATCACTGTTACTAGTGA
GGGTATTGCTACTTTTGAAATTTACAAGACGATTCCTCTTTCTGGAACAA
ATTCCGTTATTGGAAGGGGTCTTGTAGTCCACTCAAGTCCCAGTCCAGAT
CCTGGTGATGGAGTAGCTTGGGGCACCATCGGTCTCAGTTATTGAAGGGG
CTTCTCTCCATACCATAATAAATACATTTGACATGATGTCGAATGTGTCT
TGAATACTTAATAAAATAAATAATATGTTGTACGAATCAAAATCTGGCTA
TAATAAAATAAATAAAAGCCAGGGCATGTCTGTAATATGTTGTACCTTGT
AGAATGTGGCCGTAAATAAAATAAATAAAAGTCCAGGCGTGCTGTGCACT
GTCCTTAAGACTATTTCTACTCCCTTAAAAAAAAAAAAAAAAAAAAGGG
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