EY676433

Overview
NameEY676433
Unique NameEY676433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length979
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676433 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.967e-48
Identity = 100/188 (53.19%), Postives = 132/188 (70.21%), Query Frame = 3
Query:   21 DCPTEGFSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSCGPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVFKEG*SH*GFCGFASVSWLGIQYLFYHLVVDPEDGSLSSIAYLKE 584
            D PT GFSSI +A+  +RQGK V+VV+DE+ + EG+LVMAA L +P  +AF+V+HG+GIV V MKE+DL+RL+LPLM  + ENE+     FT+TVDAK GTTTGVSA DRA T+L+L+S DSKPE+F RPGH+FPLKYR GGV K             ++ L    +   +V D  DGS++ +  L+E
Sbjct:  122 DLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQLATPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKENEEKLSTAFTVTVDAKHGTTTGVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLTVLAGLDPVGVLCEIVDD--DGSMARLPKLRE 307          
BLAST of EY676433 vs. ExPASy Swiss-Prot
Match: RIBBA_NOCFA (Riboflavin biosynthesis protein ribBA OS=Nocardia farcinica GN=ribBA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.640e-31
Identity = 62/139 (44.60%), Postives = 94/139 (67.63%), Query Frame = 3
Query:   39 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSCGPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVFK 455
            F +IE+A+  +  GK V+VV+DE+ + EG+L+ AA   +P  VAFM+++ SG + V +  ED  RL LP M   A N+D  G  +T++VDA+ G TTG+SA+DRA T+  L+  D+K ++  RPGHV PL+ ++GGV +
Sbjct:    4 FDTIERAVADIAAGKAVVVVDDEDRENEGDLIFAAEKATPELVAFMIRYTSGYICVPLTGEDCDRLGLPPMY--ATNQDKHGTAYTVSVDAREGITTGISAADRATTMRLLADADAKADDLTRPGHVVPLRAKDGGVLR 140          

HSP 2 Score: 31.9574 bits (71), Expect = 8.640e-31
Identity = 17/30 (56.67%), Postives = 20/30 (66.67%), Query Frame = 1
Query:  445 GFLRRASHTEASVDLLVLAGLESS--ICSI 528
            G LRR  HTEA+VDL  +AGL  +  IC I
Sbjct:  137 GVLRRPGHTEAAVDLARMAGLRPAGVICEI 166          
BLAST of EY676433 vs. ExPASy Swiss-Prot
Match: RIBBA_SALTO (Riboflavin biosynthesis protein ribBA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ribBA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.126e-30
Identity = 61/139 (43.88%), Postives = 92/139 (66.19%), Query Frame = 3
Query:   39 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSCGPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVFK 455
            F +IEQA+  +  G+ V+VV+D N + EG+L+ AA L +P  VAFMV++ SG +   + E+D  RL+LP M     N+D  G  + +TVDA+ G +TG+SA+DRA+ +  L+ P + P++  RPGHV PL+ R GGV +
Sbjct:    4 FGTIEQAMAEILAGRPVVVVDDANRENEGDLIFAAELATPELVAFMVRYTSGYICASLTEDDCDRLDLPPM--HHTNQDRRGTAYMVTVDARKGVSTGISAADRARVIRLLADPSTTPDDLARPGHVVPLRAREGGVLR 140          

HSP 2 Score: 30.0314 bits (66), Expect = 1.126e-30
Identity = 14/21 (66.67%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  445 GFLRRASHTEASVDLLVLAGL 507
            G LRR  HTEA+ DL  LAGL
Sbjct:  137 GVLRRTGHTEAATDLTRLAGL 157          
BLAST of EY676433 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCGI (Riboflavin biosynthesis protein ribBA OS=Mycobacterium gilvum (strain PYR-GCK) GN=ribBA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.482e-30
Identity = 62/137 (45.26%), Postives = 91/137 (66.42%), Query Frame = 3
Query:   45 SIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSCGPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVFK 455
            S+E+A+  +  GK V+V++DE+ + EG+L+ AA   +P  VAFMV++ SG + V +  E   RL L  M   A N+D  G  +T+TVDAK G  TG+SASDRA T+  L+ PDS  ++F +PGHV PL+ ++GGV +
Sbjct:    6 SVERAVADIAAGKAVVVIDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPLAGEICDRLGLLPMY--AVNQDKHGTAYTVTVDAKVGVGTGISASDRATTMRLLADPDSVADDFTKPGHVVPLRAKDGGVLR 140          

HSP 2 Score: 34.2686 bits (77), Expect = 5.482e-30
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 1
Query:  445 GFLRRASHTEASVDLLVLAGLES--SICSI 528
            G LRR  HTEA+VDL  LAGL++  +IC I
Sbjct:  137 GVLRRPGHTEAAVDLARLAGLQAAGTICEI 166          
BLAST of EY676433 vs. ExPASy Swiss-Prot
Match: RIBBA_CORGL (Riboflavin biosynthesis protein ribBA OS=Corynebacterium glutamicum GN=ribBA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.576e-29
Identity = 62/135 (45.93%), Postives = 93/135 (68.89%), Query Frame = 3
Query:   45 SIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSCGPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGV 449
            S+E+A+  +  GK V+VV+DE+ + EG+++ AA L +P  VAFMV++ SG +   +  +D  RL+LP M+  A N+D+ G  +T+TVDA  G TTG+SA+DRA T+  L+ P++   +F RPGHV PL+ R GGV
Sbjct:   13 SVEEAIADIAAGKAVVVVDDEDRENEGDIIFAAELATPELVAFMVRYSSGYICAPLTAKDADRLDLPPMT--AHNQDARGTAYTVTVDANTG-TTGISATDRAHTLRLLADPEADRTDFTRPGHVVPLRAREGGV 144          

HSP 2 Score: 29.261 bits (64), Expect = 1.576e-29
Identity = 16/30 (53.33%), Postives = 19/30 (63.33%), Query Frame = 1
Query:  445 GFLRRASHTEASVDLLVLAGLESS--ICSI 528
            G L RA HTEA+VDL   AGL  +  IC +
Sbjct:  143 GVLVRAGHTEAAVDLARAAGLRPAGVICEV 172          
BLAST of EY676433 vs. ExPASy Swiss-Prot
Match: RIBBA_CORGB (Riboflavin biosynthesis protein ribBA OS=Corynebacterium glutamicum (strain R) GN=ribBA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.576e-29
Identity = 62/135 (45.93%), Postives = 93/135 (68.89%), Query Frame = 3
Query:   45 SIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSCGPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGV 449
            S+E+A+  +  GK V+VV+DE+ + EG+++ AA L +P  VAFMV++ SG +   +  +D  RL+LP M+  A N+D+ G  +T+TVDA  G TTG+SA+DRA T+  L+ P++   +F RPGHV PL+ R GGV
Sbjct:   13 SVEEAIADIAAGKAVVVVDDEDRENEGDIIFAAELATPELVAFMVRYSSGYICAPLTAKDADRLDLPPMT--AHNQDARGTAYTVTVDANTG-TTGISATDRAHTLRLLADPEADRTDFTRPGHVVPLRAREGGV 144          

HSP 2 Score: 29.261 bits (64), Expect = 1.576e-29
Identity = 16/30 (53.33%), Postives = 19/30 (63.33%), Query Frame = 1
Query:  445 GFLRRASHTEASVDLLVLAGLESS--ICSI 528
            G L RA HTEA+VDL   AGL  +  IC +
Sbjct:  143 GVLVRAGHTEAAVDLARAAGLRPAGVICEV 172          
BLAST of EY676433 vs. ExPASy Swiss-Prot
Match: RIBBA_AQUAE (Riboflavin biosynthesis protein ribBA OS=Aquifex aeolicus GN=ribBA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.085e-29
Identity = 67/141 (47.52%), Postives = 96/141 (68.09%), Query Frame = 3
Query:   39 FSSIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSCGPTFTITVDA--KFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVFK 455
            F+++E+A+  +RQGK VIVV+D + + EG+LVMAA   +P  + FM K+G G++ + +  E  ++L+L  M+P   N D  G  F +++DA  K GTTTG+SA DRA T+    SPD+KP +F RPGHVFPLK R GGV +
Sbjct:    9 FNTVEEAIEDIRQGKMVIVVDDPDRENEGDLVMAAEKVTPEAINFMAKYGRGLICLSLTPERCEQLDLHPMTP--MNTDPKGTYFCVSIDAHPKHGTTTGISAYDRALTIKLAISPDAKPSDFVRPGHVFPLKARPGGVLE 147          
BLAST of EY676433 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCUA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium ulcerans (strain Agy99) GN=ribBA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.693e-28
Identity = 63/137 (45.99%), Postives = 89/137 (64.96%), Query Frame = 3
Query:   45 SIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSCGPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVFK 455
            S+E+A+  +  GK VIV++DE+ + EG+L+ AA   +P  VAFMV++ SG + V +      RL L  M   A N+D  G  +T+TVDAK G  TG+SASDRA T+  L+ P S  E+F RPGHV PL+ ++GGV +
Sbjct:    6 SVERAVADIGAGKAVIVIDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPLDGAVCDRLGLLPMY--AVNQDKHGTAYTVTVDAKNGVGTGISASDRATTMRLLADPASVAEDFTRPGHVVPLRAKDGGVLR 140          

HSP 2 Score: 33.113 bits (74), Expect = 1.693e-28
Identity = 17/30 (56.67%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  445 GFLRRASHTEASVDLLVLAGLE--SSICSI 528
            G LRR  HTEA+VDL  +AGL+   +IC I
Sbjct:  137 GVLRRPGHTEAAVDLARMAGLQPAGAICEI 166          
BLAST of EY676433 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCMM (Riboflavin biosynthesis protein ribBA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ribBA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.693e-28
Identity = 63/137 (45.99%), Postives = 89/137 (64.96%), Query Frame = 3
Query:   45 SIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSCGPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVFK 455
            S+E+A+  +  GK VIV++DE+ + EG+L+ AA   +P  VAFMV++ SG + V +      RL L  M   A N+D  G  +T+TVDAK G  TG+SASDRA T+  L+ P S  E+F RPGHV PL+ ++GGV +
Sbjct:    6 SVERAVADIGAGKAVIVIDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPLDGAVCDRLGLLPMY--AVNQDKHGTAYTVTVDAKNGVGTGISASDRATTMRLLADPASVAEDFTRPGHVVPLRAKDGGVLR 140          

HSP 2 Score: 33.113 bits (74), Expect = 1.693e-28
Identity = 17/30 (56.67%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  445 GFLRRASHTEASVDLLVLAGLE--SSICSI 528
            G LRR  HTEA+VDL  +AGL+   +IC I
Sbjct:  137 GVLRRPGHTEAAVDLARMAGLQPAGAICEI 166          
BLAST of EY676433 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCVP (Riboflavin biosynthesis protein ribBA OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.205e-28
Identity = 59/137 (43.07%), Postives = 90/137 (65.69%), Query Frame = 3
Query:   45 SIEQALNTLRQGKFVIVVEDENGDVEGNLVMAASLTSPRHVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPEAENEDSCGPTFTITVDAKFGTTTGVSASDRAKTVLALSSPDSKPENFRRPGHVFPLKYRNGGVFK 455
            S+E+A+  +  GK V+V++DE+ + EG+L+ AA   +P  VAFMV++ SG + V +  +   RL L  M   A N+D  G  +T+TVDAK G  TG+SA DRA T+  L+ PD+  ++F +PGHV PL+ ++GGV +
Sbjct:    6 SVERAVADIAAGKAVVVIDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPLAGDICDRLGLLPMY--AVNQDKHGTAYTVTVDAKKGVGTGISAMDRATTMRLLADPDAVADDFTKPGHVVPLRAKDGGVLR 140          

HSP 2 Score: 33.8834 bits (76), Expect = 2.205e-28
Identity = 18/30 (60.00%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  445 GFLRRASHTEASVDLLVLAGLE--SSICSI 528
            G LRR  HTEA+VDL  LAGL+   +IC I
Sbjct:  137 GVLRRPGHTEAAVDLARLAGLQPAGAICEI 166          
The following BLAST results are available for this feature:
BLAST of EY676433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
RIBBA_ARATH2.967e-4853.19Riboflavin biosynthesis protein ribBA, chloroplast... [more]
RIBBA_NOCFA8.640e-3144.60Riboflavin biosynthesis protein ribBA OS=Nocardia ... [more]
RIBBA_SALTO1.126e-3043.88Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBBA_MYCGI5.482e-3045.26Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_CORGL1.576e-2945.93Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBBA_CORGB1.576e-2945.93Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBBA_AQUAE3.085e-2947.52Riboflavin biosynthesis protein ribBA OS=Aquifex a... [more]
RIBBA_MYCUA1.693e-2845.99Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCMM1.693e-2845.99Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCVP2.205e-2843.07Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676433 ID=EY676433; Name=EY676433; organism=Citrus sinensis; type=EST; length=979bp
CACGCGTCCGAGGTGATCCTGATTGCCCAACTGAAGGATTCTCCTCGATT
GAGCAGGCACTCAACACATTGCGCCAAGGAAAGTTTGTGATTGTTGTGGA
GGATGAAAATGGAGATGTTGAAGGAAACCTCGTCATGGCTGCATCTCTTA
CAAGTCCTCGGCATGTGGCTTTTATGGTTAAGCATGGTTCAGGAATTGTT
TCTGTAGGCATGAAAGAAGAGGATCTTCAAAGATTGAATCTACCATTGAT
GTCACCTGAAGCTGAAAATGAAGACTCTTGTGGCCCAACTTTCACAATCA
CAGTGGATGCAAAATTTGGCACAACTACTGGGGTATCGGCTTCAGATAGG
GCAAAGACTGTTCTTGCTCTTTCATCTCCAGATTCTAAGCCAGAAAACTT
CAGGAGGCCAGGGCATGTGTTTCCCCTCAAGTATCGAAATGGTGGGGTTT
TTAAGGAGGGCTAGTCACACTGAGGCTTCTGTGGATTTGCTAGTGTTAGC
TGGCTTGGAATCCAGTATCTGTTCTATCACCTGGTTGTTGATCCCGAGGA
TGGTTCCCTGTCCTCCATTGCCTATTTAAAGGAAGTTTGGGATTTGGAGC
CCACCATCCCCAATTGTGGTCAATAACCAAATTTTTGATCAAATTTTCCG
CCAAAAAAAAAAAAAACCTTTTGGTTGAAAGAAACTGGCCCTTTTTCCCC
TTTTTGGCCAACAAAAATGGGGGTTCCCTTTTCCAGCTTTACGGCTATTC
CCCCCAAACCTAAAAAGGGAAAAAAAATTTTTTTGGCTTTTTTGTGAAAG
GGAAAAATTGGGGAAAAAGGGAAAAAAAAAGTTTTCTTTTGAAAAAATTT
TTTTTTTATCAAAAAATTTATTAACAAGGGAGAAAAATAATTTTTGGGGG
GGCCACCCCCCGCGGGGTGGGTAGTGGTGGGGGGGACAAACCACCTTTAT
GGGTGTTTTTTTTGGGGGCCAAGTTGGCA
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