EY676432

Overview
NameEY676432
Unique NameEY676432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY676432_ssr16 microsatellite EY676432_ssr16:16..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.079e-68
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 3 
Query:   63 MAPFSFYRNYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            M    FYRNYGKTFKKPRRPYEKERLD EL+LVGEYGLRCKRELWRVQY LSRIRNAAR+LLTLDEKNPRRIFEGEALLRRM+RYG L+E+QNKLDYVLALTVENFLERRLQT
Sbjct:    1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQT 113

HSP 2 Score: 73.9442 bits (180), Expect = 2.079e-68
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:  379 FLSVVSRPLVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEVCFPKPL*I-LPSQFLSGRGAPGKNWKKGKSQGA 615
            FL    + +VFKSGMA S+HHARVLIRQRHIRVGRQLVN PSF + V   K +   L S F  G G PG+  ++ +  GA
Sbjct:  106 FLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPF--GGGRPGRVKRRNERAGA 183
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.325e-64
Identity = 99/113 (87.61%), Postives = 105/113 (92.92%), Query Frame = 3 
Query:   63 MAPFSFYRNYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            M    +YRNYGKTFK PRRPYEKERLD EL+LVGEYGLR KRELWRVQY+LSRIRNAARDLLTLDEK+PRRIFEGEALLRRM+RYG L+ESQNKLDYVLALTVENFLERRLQT
Sbjct:    1 MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT 113

HSP 2 Score: 68.5514 bits (166), Expect = 1.325e-64
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:  379 FLSVVSRPLVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEVCFPKPL*I-LPSQFLSGRGAPGK 585
            FL    + +VFKSGMA S+HH+RVLIRQRHIRVG+QLVN PSF + +   K +   L S F  G G PG+
Sbjct:  106 FLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPF--GGGRPGR 173
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.841e-51
Identity = 71/105 (67.62%), Postives = 91/105 (86.67%), Query Frame = 3 
Query:   87 NYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            NY KT   PRRP+EKER+D EL++VGE+GL+ K E+WRVQYAL++IR AAR+LL LDEK+P+RIFEG ALLRR+H+ G +EES+NKLDY+L L V++F+ERRLQT
Sbjct:    4 NYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQT 108

HSP 2 Score: 68.1662 bits (165), Expect = 8.841e-51
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  403 LVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEVCFPKPL*ILPSQFLSGRGAPGKNWKK 597
            LVFK+G+A S+HHARVLI+ RHIRVG+QLVN PSF + V   K L +  +  L+G G PG+  +K
Sbjct:  109 LVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAG-GRPGRRARK 172
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.308e-48
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 3 
Query:   63 MAPFSFYRNYGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            MAP    R+Y KT K PRRP+E  RLD EL+LVGEYGLR KRE+WRV   LS+IR AAR+LLTLDEK+P+R+FEG AL+RR+ R G L+ES+ KLDYVLAL  E+FLERRLQT
Sbjct:    1 MAP----RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQT 109

HSP 2 Score: 65.0846 bits (157), Expect = 2.308e-48
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:  379 FLSVVSRPLVFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEVCFPKPL*I-LPSQFLSGRGAPGKNWKK 597
            FL    + LV+K G+A S+HHARVLIRQRHIRVG+Q+VN PSF + +   K +   L S F  G G PG+  +K
Sbjct:  102 FLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPF--GGGRPGRVRRK 173
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.921e-47
Identity = 70/104 (67.31%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:   90 YGKTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            + KT+  PRRPYEK RLD EL+++GEYGLR KRE+WRV+YAL++IR AAR+LLTLDEK+ +R+F+G ALLRR+ R G L+ES+ KLDYVL L +E+FLERRLQT
Sbjct:   10 FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQT 113

HSP 2 Score: 63.1586 bits (152), Expect = 1.921e-47
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:  406 VFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEVCFPKPL*I-LPSQFLSGRGAPG----KNWKKGKSQG 612
            VFK G+A S+HHARVLIRQRHIRV +Q+VN PSF + +   K +   L S F  G G PG    KN KK +  G
Sbjct:  115 VFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPF--GGGRPGRVKRKNLKKNQGGG 186
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 147.132 bits (370), Expect = 5.545e-47
Identity = 69/102 (67.65%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQT 112

HSP 2 Score: 62.7734 bits (151), Expect = 5.545e-47
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  406 VFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEVCFPKPL*I-LPSQFLSGRGAPG----KNWKKGKSQGAA 618
            VFK G+A S+HHARVLIRQRHIRV +Q+VN PSF + +   K +   L S +  G G PG    KN KKG+    A
Sbjct:  114 VFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPY--GGGRPGRVKRKNAKKGQGGAGA 187
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.545e-47
Identity = 69/102 (67.65%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQT 112

HSP 2 Score: 62.7734 bits (151), Expect = 5.545e-47
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  406 VFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEVCFPKPL*I-LPSQFLSGRGAPG----KNWKKGKSQGAA 618
            VFK G+A S+HHARVLIRQRHIRV +Q+VN PSF + +   K +   L S +  G G PG    KN KKG+    A
Sbjct:  114 VFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPY--GGGRPGRVKRKNAKKGQGGAGA 187
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 5.545e-47
Identity = 69/102 (67.65%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQT 112

HSP 2 Score: 62.7734 bits (151), Expect = 5.545e-47
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  406 VFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEVCFPKPL*I-LPSQFLSGRGAPG----KNWKKGKSQGAA 618
            VFK G+A S+HHARVLIRQRHIRV +Q+VN PSF + +   K +   L S +  G G PG    KN KKG+    A
Sbjct:  114 VFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPY--GGGRPGRVKRKNAKKGQGGAGA 187
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 5.545e-47
Identity = 69/102 (67.65%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQT 112

HSP 2 Score: 62.7734 bits (151), Expect = 5.545e-47
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  406 VFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEVCFPKPL*I-LPSQFLSGRGAPG----KNWKKGKSQGAA 618
            VFK G+A S+HHARVLIRQRHIRV +Q+VN PSF + +   K +   L S +  G G PG    KN KKG+    A
Sbjct:  114 VFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPY--GGGRPGRVKRKNAKKGQGGAGA 187
[Close]
BLAST of EY676432 vs. ExPASy Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.545e-47
Identity = 69/102 (67.65%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:   96 KTFKKPRRPYEKERLDPELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQT 401
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQT 112

HSP 2 Score: 62.7734 bits (151), Expect = 5.545e-47
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  406 VFKSGMAGSVHHARVLIRQRHIRVGRQLVNFPSFCIEVCFPKPL*I-LPSQFLSGRGAPG----KNWKKGKSQGAA 618
            VFK G+A S+HHARVLIRQRHIRV +Q+VN PSF + +   K +   L S +  G G PG    KN KKG+    A
Sbjct:  114 VFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPY--GGGRPGRVKRKNAKKGQGGAGA 187
The following BLAST results are available for this feature:
BLAST of EY676432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS92_ARATH2.079e-6889.3840S ribosomal protein S9-2 OS=Arabidopsis thaliana... [more]
RS91_ARATH1.325e-6487.6140S ribosomal protein S9-1 OS=Arabidopsis thaliana... [more]
RS9_DICDI8.841e-5167.6240S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9_PODAN2.308e-4868.1440S ribosomal protein S9 OS=Podospora anserina GN=... [more]
RS9_DROME1.921e-4767.3140S ribosomal protein S9 OS=Drosophila melanogaste... [more]
RS9_RAT5.545e-4767.6540S ribosomal protein S9 OS=Rattus norvegicus GN=R... [more]
RS9_PAPAN5.545e-4767.6540S ribosomal protein S9 OS=Papio anubis GN=RPS9 P... [more]
RS9_MOUSE5.545e-4767.6540S ribosomal protein S9 OS=Mus musculus GN=Rps9 P... [more]
RS9_HUMAN5.545e-4767.6540S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
RS9_BOVIN5.545e-4767.6540S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676432 ID=EY676432; Name=EY676432; organism=Citrus sinensis; type=EST; length=946bp
CACGCGTCCGATCGCAGAGAGAGAGACCTTTTGAGTGAGGGTAGCACCAG
CGGCGCGCAAAGATGGCCCCCTTTTCATTCTACCGCAACTATGGGAAAAC
CTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATCCTGAGT
TGAGGCTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGG
GTTCAATATGCATTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCAC
TCTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGTGAGGCCCTTCTCA
GGAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGAT
TATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGAC
CCCTTGTGTTCAAGAGTGGCATGGCTGGGTCGGTTCACCATGCTCGAGTG
CTCATCAGGCAAAGGCACATTAGGGTTGGGAGGCAACTTGTCAACTTTCC
CTCCTTTTGTATTGAGGTTTGTTTCCCAAAACCCCTTTGAATTCTCCCTT
CACAATTCCTTTCCGGAAGGGGGGCCCCCGGAAAAAATTGGAAAAAAGGG
AAATCTCAGGGTGCCGCCAATAAGGGGCCGCCCGGGTGGAAAAGGGGGAA
GAAAAGGATAGAAAAAAAAAATTTCCGTGGGGAAAAAGATAGGTTTTTTT
ATGGGTCCCAGGAGGGATTTCTGGGCGGAACTTTTGGGTGGGGGCTATTA
TGCTTTCCCCGAAGTTTTTTGTGTTTTTTTTGTGGACAATTTTTTTTGAG
ATAAAAGGGGGGGGGGTTTTTGTTGGGGTGTTTGGGTGTTTTTACGAAGT
ACACACTTGATTTGAAAAGAATTTTTTTTTGTTGTTTTTTTTGGGGAGGG
GACAGCCTCTGTTATTGATTGTTAACAATTCGTTATTTTTTATGTA
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