EY658306

Overview
NameEY658306
Unique NameEY658306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY658306 vs. ExPASy Swiss-Prot
Match: VAR3_ARATH (Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 6.514e-14
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 2 
Query:   53 LKMKRGDWMCPKCNFMNFARNRQCLNCNEDGPRKAAVEIEMKKGDWTCPKCNFINFSRNVRCRDCKAEGPK 265
            ++MKRGDW+C +C+ MNFARN +C  C+E  P++     ++   +W CP+C+F N+ RNV C  C  + P+
Sbjct:  273 VEMKRGDWICSRCSGMNFARNVKCFQCDEARPKR-----QLTGSEWECPQCDFYNYGRNVACLRCDCKRPR 338
The following BLAST results are available for this feature:
BLAST of EY658306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
VAR3_ARATH6.514e-1442.25Zinc finger protein VAR3, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-135-H02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY658306 ID=EY658306; Name=EY658306; organism=Citrus sinensis; type=EST; length=1003bp
GGTACCCGGGTTCCGGGATTTCCCGGGTTCGACCCACGCGTCCGCAACAA
TGTTGAAAATGAAAAGAGGCGATTGGATGTGTCCCAAATGCAATTTCATG
AACTTTGCCAGAAATAGACAATGCCTAAACTGCAATGAAGATGGTCCTCG
AAAGGCTGCTGTTGAGATTGAAATGAAGAAAGGAGATTGGACCTGTCCTA
AATGCAATTTCATCAACTTTTCTAGAAATGTGAGGTGCCGGGACTGCAAA
GCAGAGGGGCCAAAGAGGATTGCTGTGCATGAGGTTGAAATGAAGCCAGG
CGATTGGAACTGTCCTAAATGTGGGTTTCTTGAATTTTGCTAGCAACAAA
CGTTGTTTGCCGTTTGTCCTGAAAAACGGCCCCTTGTCCAAGGAGAATGG
GGAATGCCCATACGCGAAATAAAATCTGCCCTAAAGTGGCAAGTCTGAAC
ACCCCAGAAAAAGCTTACAAAGGAATTATAAAAATATTTAATGGAAAACC
CACTCGAAATAAAGGTATTTAACAACCTCAACATATTTTTTTGCATGGGG
GATTGTTATGTGGGTGGTCAAGGATAAAATTAAAGGGTAGGTTCAGTATG
GAAATGCCAAAGAAATTCTCTTATGGCGCTCAATTATTTGTATAAAGGGT
GGGTCATTCTAAAACGCGAGGGGAACCAGGAGGGGAAATTCATATCTAAA
TAGGTTCGTGTCTTTTCCTTTCAGCCTTTACCTAAAAAAACATACAGGAG
GAATTTATTAATAAAATATACTAACAAAAAGAAATTTTGCGGTCTATTTA
AATTTTTCTCTGGTAGATTTTCTAAGCTCTTACACCCTTAAATAAACGAA
TAAATAAGGGGTTGGCTCCCTTACAGGCGTATTCCACGAATCATATCGCC
CTTGATGAATCGAAGACTATCAAACTCTGTACATAAAATGAACCATAAAT
ATGACAATAACTAAAGAAACGTTTATTTCACTACCGACAACTGTGGGGAC
TAA
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