EY658303

Overview
NameEY658303
Unique NameEY658303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length969
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY658303 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 5.126e-69
Identity = 128/177 (72.32%), Postives = 149/177 (84.18%), Query Frame = 2
Query:   20 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEGPKGNTPIPFVQIIGI*NNKRQGHCIIFL 550
            MASSMISS TVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YL+  GWIPCLEFELE  +VYRE++ SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K   P   ++IIG  +NKRQ  CI F+
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASK-TYPTSHIRIIGF-DNKRQVQCISFI 175          
BLAST of EY658303 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 5.667e-68
Identity = 122/172 (70.93%), Postives = 141/172 (81.98%), Query Frame = 2
Query:   35 ISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEGPKGNTPIPFVQIIGI*NNKRQGHCIIFL 550
            ISS+ +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE  K   P  F+++IG  +N RQ  CI F+
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKK-EYPNAFIRVIGF-DNIRQVQCISFI 173          
BLAST of EY658303 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.263e-67
Identity = 129/177 (72.88%), Postives = 145/177 (81.92%), Query Frame = 2
Query:   20 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEGPKGNTPIPFVQIIGI*NNKRQGHCIIFL 550
            MA SMISS TVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR   IPCLEFELE G+VYREH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E  K   P  F++IIG  +NKRQ   I F+
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKA-YPSAFIRIIGF-DNKRQVQIISFI 175          
BLAST of EY658303 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.649e-67
Identity = 130/179 (72.63%), Postives = 148/179 (82.68%), Query Frame = 2
Query:   20 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEGPKGNTPIPFVQIIGI*NNKRQGHCIIFL 550
            MASSMISS TVAT  A+R + AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E  K   P  F++IIG  +N RQ  CI F+
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKA-YPQSFIRIIGF-DNVRQVQCISFI 176          
BLAST of EY658303 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.154e-67
Identity = 121/174 (69.54%), Postives = 144/174 (82.76%), Query Frame = 2
Query:   29 SMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEGPKGNTPIPFVQIIGI*NNKRQGHCIIFL 550
            ++ISS  V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPCLEFELEKG+VYRE+H SPGYYDGRYWTMW+LP++G TD++QVLKE+ +  K   P  F++IIG  +N RQ  CI F+
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELAD-CKAEYPDSFIRIIGF-DNVRQVQCISFI 173          
BLAST of EY658303 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.798e-67
Identity = 130/179 (72.63%), Postives = 148/179 (82.68%), Query Frame = 2
Query:   20 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEGPKGNTPIPFVQIIGI*NNKRQGHCIIFL 550
            MASSMISS TVAT  A+R + AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E  K   P  F++IIG  +N RQ  CI F+
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKA-YPQSFIRIIGF-DNVRQVQCISFI 176          
BLAST of EY658303 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 3.110e-66
Identity = 125/177 (70.62%), Postives = 142/177 (80.23%), Query Frame = 2
Query:   20 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEGPKGNTPIPFVQIIGI*NNKRQGHCIIFL 550
            MASSM+S+ TVA+ NR S AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMKVWP  G+KKFETLSYLPPL+ E L  E+ YLLRSGWIPCLEFELE G VYREH   PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E  K + P  + +IIG  +N RQ  CI FL
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIK-HHPDGYARIIGF-DNVRQVQCISFL 175          
BLAST of EY658303 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 3.110e-66
Identity = 126/177 (71.19%), Postives = 142/177 (80.23%), Query Frame = 2
Query:   20 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEGPKGNTPIPFVQIIGI*NNKRQGHCIIFL 550
            MASSM+S+  VA  NRAS AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YLLR GW+PCLEFELE G VYRE+H SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E  K   P  + +IIG  +N RQ  CI FL
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKA-YPDCYGRIIGF-DNVRQVQCISFL 175          
BLAST of EY658303 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 9.048e-66
Identity = 123/178 (69.10%), Postives = 148/178 (83.15%), Query Frame = 2
Query:   20 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEGPKGNTPIPFVQIIGI*NNKRQGHCIIFL 550
            MASS++SS  VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K   P  +++IIG  +N RQ  CI F+
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKA-YPQAWIRIIGF-DNVRQVQCISFI 174          
BLAST of EY658303 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.182e-65
Identity = 123/178 (69.10%), Postives = 148/178 (83.15%), Query Frame = 2
Query:   20 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEGPKGNTPIPFVQIIGI*NNKRQGHCIIFL 550
            MASS++SS  VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYREH+SSPGYYDGRYWTMWKLPM+GCTD TQVL EV E  K   P  +++IIG  +N RQ  CI F+
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEA-KNAYPQAWIRIIGF-DNVRQVQCISFI 174          
The following BLAST results are available for this feature:
BLAST of EY658303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
RBS_FAGCR5.126e-6972.32Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LACSA5.667e-6870.93Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE1.263e-6772.88Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY1.649e-6772.63Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA2.154e-6769.54Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP4.798e-6772.63Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES3.110e-6670.62Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR3.110e-6671.19Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU9.048e-6669.10Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS0_SOLTU1.182e-6569.10Ribulose bisphosphate carboxylase small chain C, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-135-G09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY658303 ID=EY658303; Name=EY658303; organism=Citrus sinensis; type=EST; length=969bp
CCAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATCGACCACCG
TTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCC
TTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAA
CAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGA
AGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTC
CCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCG
CTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGT
ACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACA
ATGTGGAAACTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAA
GGAGGTGGGGGAAGGTCCAAAAGGAAATACCCCCATTCCTTTCGTCCAAA
TTATCGGAATTTGAAACAACAAGCGTCAAGGGCATTGCATCATTTTCCTT
GGCGGCCAAGCCACAAGGCGTCTAGGTTCCCAATTAAAATTTGGGAACCC
CCCCATGGCAAATTGGTTGAAATAATTTTTTTATGGGGAAACCCCCCAAA
AAGGATATTCAATTAAAGGGGGGGTCGGGGTTGGGTTTAATTTTGAACTA
AGGCGGGGTGGTGGGTGGGGGCCCAAAAATTTTTTTGGGGTTTTCCCCCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCCCCCCTATAAAG
AAAACCAATCTTAAATTCCAGGGGTGAGGAGGCAAAACTGCCAAAACCAC
TTCTATAAGAGGGGGCCCAAAAAATTTAAAATTACGTGGGGGCGCGCTCT
TTTTACAACACAGGCGCGGGGGCAGGGGGGAAAAACACCCCGGGGGGGTA
TACAACCCCAAAATCATAC
back to top