EY658302

Overview
NameEY658302
Unique NameEY658302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length987
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY658302_ssr705 microsatellite EY658302_ssr705:705..716. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY658302 vs. ExPASy Swiss-Prot
Match: ARR2_ARATH (Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.929e-12
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 3 
Query:  111 AADVAVPDQFPAGLRVLVVDKNLGWGGIQKKISYL*ITMSHRVVFEHRA--IXXILRERKGCFDVVLSDVHMPDMDGFRLLEHIGLEM 368
            AA  +  D FPA LRVLVVD +     I +++    +T  +RV   +RA     +LR+ K  FD+V+SDVHMPDMDGF+LLEH+GLEM
Sbjct:   15 AAGGSNSDPFPANLRVLVVDDDPTCLMILERML---MTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHVGLEM 99
[Close]
BLAST of EY658302 vs. ExPASy Swiss-Prot
Match: ARR11_ARATH (Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.019e-11
Identity = 41/80 (51.25%), Postives = 50/80 (62.50%), Query Frame = 3 
Query:  141 PAGLRVLVVDKNLGWGGIQ----KKISYL*ITMSHRVVFEHRAIXXILRERKGCFDVVLSDVHMPDMDGFRLLEHIGLEM 368
            P GLRVLVVD +  W  I     KK SY   T         R    +LRERK  +D+V+SDV+MPDMDGF+LLEH+GLE+
Sbjct:    8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLA-----REALRLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEL 82
[Close]
BLAST of EY658302 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.555e-11
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 3 
Query:  126 VPDQFPAGLRVLVVDKNLGWGGIQKKISYL*ITMSHRVVFEHRA--IXXILRERKGCFDVVLSDVHMPDMDGFRLLEHIGLEM 368
            V + FP+GLRVLVVD +     I +++     T  + V   +RA     +LR+ K  FD+V+SDVHMPDMDGF+LLEH+GLEM
Sbjct:   29 VVEMFPSGLRVLVVDDDPTCLMILERMLR---TCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPDMDGFKLLEHVGLEM 108
The following BLAST results are available for this feature:
BLAST of EY658302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARR2_ARATH5.929e-1250.00Two-component response regulator ARR2 OS=Arabidops... [more]
ARR11_ARATH5.019e-1151.25Two-component response regulator ARR11 OS=Arabidop... [more]
ARR1_ARATH6.555e-1149.40Two-component response regulator ARR1 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-135-G08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY658302 ID=EY658302; Name=EY658302; organism=Citrus sinensis; type=EST; length=987bp
CGGACGCGTGGGCTGCTTCCACTGAGATTAGCTGTTGCCGTTGCTGAAAA
ATGGCTGCTTTGCAGAGAATAGTGCAGTCCTCGGGCGGCAGTGGCTACGG
GTCTAGCAGGGCAGCTGACGTGGCAGTACCTGATCAGTTTCCTGCTGGAC
TAAGGGTTCTTGTTGTTGACAAAAACTTAGGGTGGGGGGGAATCCAAAAA
AAGATCTCATACCTATAAATAACCATGTCACATAGGGTGGTATTTGAACA
CAGAGCGATTTGNNATATTCTACGGGAGAGGAAGGGCTGTTTTGATGTGG
TGTTAAGTGACGTTCACATGCCTGATATGGATGGCTTCAGACTTCTTGAA
CATATTGGACTTGAAATGGGATCTTCCTGGTATCATGATGTCCGGCTTAT
GGAAAAATATCCGCTGTTGATGAGGGGAAATTAAAAATGCAAGCTTGGGA
TTACTTGATTTAAGCCTAAACGTGAAAAGAAAGCTTTTAAAAATAGCTGG
CAACAATGTTGTTTCGAAAAAAGGTGGGAAGGAAAATAAAAAAACCTGGA
AATTTTCTGGGGTGGCCTTGGGAAAAAACCTGATTCTTCAAAAAAAAAAA
GAAAAGGTTAAGAAAATGGGTATTAGGCTCTCCTTCGTGTTAAACAAAGG
GGGACACAGACNACAAAATAATTAAAACTGCAAAAAAAAAAGCAGTGATA
AATGATAAATAAATAAAAGGAAAATAAAAAAAAAAGTAACTTAAACACGA
CCACCGCCGTGGAAAGCACATGATCAAAAAAAAAATACACCATCTGGGAG
AGGGGTGTGGAGAACGGAATCGACACACAAAACTACCACAAATTTTTTGG
CCACTAAAAGCGGGTGAACATAAAACACCTTAGGGGGGGATATGGGTGGA
AAAGTGGACACGACGACAACAACAAAATAAAGAAAGAAAATACATTTGTA
TATAGAAAATATTTAAAGAAAAAATAAAAAATGGGTG
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