EY658297

Overview
NameEY658297
Unique NameEY658297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1034
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY658297 vs. ExPASy Swiss-Prot
Match: FCSB_DICDI (Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.823e-14
Identity = 42/129 (32.56%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    7 VRTIVIFANVSSSQKKEAEELGVSCFSWEEFLQLGT----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFLA 381
            ++TI+ F ++       A+ELGV+ ++++E ++ G          PP   T +STIMYTSGTTG PKGV++T++ + + V +V     V      + D ++S+LP AH+ ++++     H G +IG  +
Sbjct:  194 LKTIICFDSIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDT-LSTIMYTSGTTGPPKGVMITHKNLTSVVCAVSDFIKV-----YDTDVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316          
BLAST of EY658297 vs. ExPASy Swiss-Prot
Match: LCF1_YEAST (Long-chain-fatty-acid--CoA ligase 1 OS=Saccharomyces cerevisiae GN=FAA1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.138e-11
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 1
Query:    7 VRTIVIFANVSSSQKKEAEEL----------------GVSCFSWEEFLQLGTLDC---ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF 375
            V+ I+ F ++SS  ++++ ++                 +  FS+++ L+LG   C   ++ P  K ++  IMYTSG+TGEPKGVVL +  +VA V       +   K     D    FLPLAHI++ + E    + G  IG+
Sbjct:  197 VKYIIHFDSISSEDRRQSGKIYQSAHDAINRIKEVRPDIKTFSFDDILKLGKESCNEIDVHPPGKDDLCCIMYTSGSTGEPKGVVLKHSNVVAGVGGASLNVL---KFVGNTDRVICFLPLAHIFELVFELLSFYWGACIGY 335          
BLAST of EY658297 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.099e-11
Identity = 39/126 (30.95%), Postives = 69/126 (54.76%), Query Frame = 1
Query:    1 PRVRTIVIFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF 375
            P ++ IV+  +  S   ++ ++ GV   S +    LG  +   P P +  +++ I +TSGTTG PKG ++T++ +V++  S          V +  D + SFLPLAH+Y+Q+++   +  G  IGF
Sbjct:  219 PGLKIIVVMDSYGSELVEQGKKCGVEVISLKAMEGLGRANRRKPKPPEPDDLAVICFTSGTTGNPKGAMITHKNVVSDC-SAFVKATEKALVLNASDIHISFLPLAHMYEQLLQCVMLCHGAKIGF 343          
BLAST of EY658297 vs. ExPASy Swiss-Prot
Match: ACSL1_MOUSE (Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.991e-11
Identity = 40/130 (30.77%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    1 PRVRTIVIFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE----VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF 375
            P ++ IVI  +  S   +  ++ GV   S +    LG ++   P P +  +++ I +TSGTTG PKG ++T+Q I+ +    + + +  F     + S +D   SFLPLAH+++ ++E   +  G  IGF
Sbjct:  220 PCLKIIVIMDSYGSDLVERGKKCGVEIISLKALEDLGRVNRVKPKPPEPEDLAIICFTSGTTGNPKGAMITHQNIINDCSGFIKATESAF-----IASTDDVLISFLPLAHMFETVVECVMLCHGAKIGF 344          
BLAST of EY658297 vs. ExPASy Swiss-Prot
Match: ACSL1_HUMAN (Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.991e-11
Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 1
Query:    1 PRVRTIVIFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF 375
            P ++ IV+     S   +  +  GV   S +    LG  +   P P    +++ I +TSGTTG PKG ++T++ IV++  +  +    T   C + DT  SFLPLAH++++++E   +  G  IGF
Sbjct:  219 PGLKIIVVMDAYGSELVERGQRCGVEVTSMKAMEDLGRANRRKPKPPAPEDLAVICFTSGTTGNPKGAMVTHRNIVSDCSAFVKATENTVNPCPD-DTLISFLPLAHMFERVVECVMLCHGAKIGF 343          
BLAST of EY658297 vs. ExPASy Swiss-Prot
Match: ACSL5_RAT (Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.131e-11
Identity = 40/130 (30.77%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    1 PRVRTIVIFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS----VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF 375
            P ++T+++         K  E+ G+   S  +   LG  + + P P    ++S I +TSGTTG+PKG +LT+Q IV+ + +    ++ +F  T      ED   S+LPLAH+++++++      G  IGF
Sbjct:  204 PGLKTVILMDPFDDDLMKRGEKCGIEMLSLHDAENLGKENFKKPMPPNPEDLSVICFTSGTTGDPKGAMLTHQNIVSNMAAFLKFLEPIFQPT-----PEDVTISYLPLAHMFERLVQGVIFSCGGKIGF 328          
The following BLAST results are available for this feature:
BLAST of EY658297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FCSB_DICDI8.823e-1432.56Fatty acyl-CoA synthetase B OS=Dictyostelium disco... [more]
LCF1_YEAST3.138e-1130.99Long-chain-fatty-acid--CoA ligase 1 OS=Saccharomyc... [more]
ACSL1_CAVPO4.099e-1130.95Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
ACSL1_MOUSE6.991e-1130.77Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculu... [more]
ACSL1_HUMAN6.991e-1131.75Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapien... [more]
ACSL5_RAT9.131e-1130.77Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norv... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-135-G03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY658297 ID=EY658297; Name=EY658297; organism=Citrus sinensis; type=EST; length=1034bp
CCACGCGTCCGAACTATTGTCATCTTTGCAAATGTTTCTAGCTCACAGAA
GAAGGAAGCTGAAGAACTTGGGGTCTCTTGCTTTTCTTGGGAGGAATTTC
TACAGTTGGGAACTCTGGATTGTGAACTTCCACCGAAAAAGAAGACCAAC
ATTTCCACAATAATGTATACAAGTGGAACAACAGGAGAACCTAAAGGTGT
CGTTCTCACTAATCAGGCTATTGTAGCAGAAGTACTGAGTGTCGACCAAA
TGTTTGTGGTTACGGGCAAAGTGTGTTCAGAAGAGGATACATACTTCTCA
TTCCTTCCTTTGGCCCATATATATGATCAGATCATTGAAACTCATTGCAT
CCACAAGGGTTGTTCAATAGGATTTTTGGCAAGGCGTAAAAAACAAAACT
TCTATTTCCCAATGGGATTTCTTCGGTTTTCGAAATTGAGGGCCTCTCCA
CTATATTTTCTTGTTTGATTTTTGCTTGCACGATGTTTCGGATTTGAATG
GAAGGAAAATCCCAGGAACTAAAAACCAACAATGGTTTTCCGGGGGGCCC
CTAAAAGGGGATGAGCGGAAATATACACTGGAAAAACCAAAAAAAATAAT
CATTCGGGAGGGCCACCTGGCAAAGAAATTTGTTTGAAAATTTGCTTATA
ACTTCAAATTTGGGAAAAAATAGAAAAAGGGGGCAGCCCACAAAAAAAAA
CCAGCCCCCACTCTATAAAAAGCCCTGAATATCAAAAAAAAAAAGGGAAA
ATTTTTTGGAGAGAAAAACATCCAAACCCCTTATTATTCGGGGGCCCAAC
CCCCCTTGACACCATTTCTGTGTGAGGGAGAATACACACCGCAGAGGACA
ATAAGGGGGTGGCCTTATAATAAAACAGAGGAGATGGAGGGAAGAGGATA
AAGGAAAAATGATCGTATTTGAGATTTATAAAAATAAAACGGATGCGAAA
AGTTGTATAGTAACAGAAAATAAATTTTTAGACACAATAATTAAATAGAT
CAAATAAAAGTTATTTTTTTCTCTGCCGATTGAA
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