EY675627

Overview
NameEY675627
Unique NameEY675627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length936
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: SSY3_SOLTU (Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.723e-64
Identity = 128/179 (71.51%), Postives = 141/179 (78.77%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQALDLETKWI*F*WS*YCWSQFMLLIGQFLLYYDGREWVGNSINAEQ*WNKNGSWNPP 537
            RLTH KGIHLIKHAIWRTL+R GQVVLLGSAPDPR+QN+FVNLAN+LHS + DRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQL AMRYGSIPVVRKTGGLYDTVFDVDHDKERAQ   LE     F  +      +  L      +YDGR+W  NS+  +Q   ++ SWN P
Sbjct: 1040 RLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRVQNNFVNLANQLHSKYNDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQQCGLEPNGFSFDGADAGGVDY-ALNRALSAWYDGRDWF-NSL-CKQVMEQDWSWNRP 1215          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA_PARUW (Glycogen synthase OS=Protochlamydia amoebophila (strain UWE25) GN=glgA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.435e-28
Identity = 60/120 (50.00%), Postives = 87/120 (72.50%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDKER 360
            RL   KGI LIKH I   +++ GQ +LLGS+P P I ++F  L ++ ++ H     L L + E L+HLIYAG+D  +VPS+FEPCGLTQ++A++YG++P+VR+TGGL DT+ DVDH  ++
Sbjct:  316 RLVPQKGIDLIKHTIRHIVEKKGQFILLGSSPIPSINDEFHRLKHQ-YTDHP-HIHLILHHSEELAHLIYAGSDMFIVPSLFEPCGLTQIIALKYGTVPIVRRTGGLADTIIDVDHTDQQ 433          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA2_METCA (Glycogen synthase 2 OS=Methylococcus capsulatus GN=glgA2 PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.215e-27
Identity = 64/115 (55.65%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVD 345
            RL   KGI LI+HA++ TL +GGQ VLLGS+PD  I   F  L  + + +      L + Y+E L+HL+YAG+D ++VPS FEPCGLTQL+AMRYG+IPVVR+ GGL DTV D D
Sbjct:  304 RLDPQKGIELIRHALFYTLGQGGQFVLLGSSPDGAINGYFWGLKRQFNDN--PDCHLEIGYNEELAHLVYAGSDVMVVPSRFEPCGLTQLIAMRYGTIPVVREIGGLADTVIDKD 416          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA2_ANASP (Probable glycogen synthase 2 OS=Anabaena sp. (strain PCC 7120) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.343e-26
Identity = 60/118 (50.85%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDK 354
            RL + KG+HL+ HAI+  L++G Q VLLGSA +  I   F +    L+S+      L L ++E LSHLIYAGAD I+VPS +EPCGLTQ++ ++YG++P+VR  GGL +TVFD D+D+
Sbjct:  307 RLDNQKGVHLVHHAIYHALNKGAQFVLLGSATEAGINAHFRHEKQFLNSN--PDVHLELGFNEELSHLIYAGADMIVVPSNYEPCGLTQMIGLKYGTVPIVRGVGGLVNTVFDRDYDQ 422          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA1_SYNJA (Glycogen synthase 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.343e-26
Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDKER 360
            RL   KG+HL+ HAI+R+L +  Q VLLGSA +P I   F +    L+ +      + L ++E LSHLIYAGAD ++VPS +EPCGLTQ++ ++YG++PVVR  GGL DTVFD D+D  +
Sbjct:  307 RLDEQKGVHLVHHAIYRSLFKNAQFVLLGSATEPGIGAWFAHEKRYLNDN--PDVHIELGFNEELSHLIYAGADILVVPSHYEPCGLTQMIGLKYGTVPVVRGVGGLVDTVFDRDYDTRK 424          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA1_ANAVT (Glycogen synthase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.291e-26
Identity = 59/118 (50.00%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDK 354
            RL + KG+HL+ HAI+ +L++G Q VLLGSA +  I   F +    L+++      L L ++E LSHLIYAGAD I+VPS +EPCGLTQ++ ++YG++P+VR  GGL +TVFD D+D+
Sbjct:  307 RLDNQKGVHLVHHAIYHSLNKGAQFVLLGSATEAGINAHFRHEKQFLNNN--PDVHLELGFNEELSHLIYAGADMIVVPSNYEPCGLTQMIGLKYGTVPIVRGVGGLVNTVFDRDYDQ 422          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA2_SYNY3 (Probable glycogen synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=glgA2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.105e-26
Identity = 58/118 (49.15%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDK 354
            RL   KG+HL+ H+I+  L +G Q VLLGSA +P +   F +   + H +      L L +DE L+HLIY  AD I+VPS +EPCGLTQ++ +RYG++PVVR  GGL +TVFD D+D+
Sbjct:  308 RLDGQKGVHLVHHSIYYALSQGAQFVLLGSATEPNLSKWFWH--EKQHLNDNPNVHLELGFDEELAHLIYGAADIIVVPSNYEPCGLTQMIGLRYGAVPVVRGVGGLVNTVFDRDYDQ 423          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA1_SYNJB (Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.105e-26
Identity = 60/120 (50.00%), Postives = 84/120 (70.00%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDKER 360
            RL   KG+HL+ HAI+R+L +  Q VLLGSA +  I   F +  + L+++      + L ++E LSHLIYAGAD I+VPS +EPCGLTQ++ ++YG++PVVR  GGL DTVFD D+D  +
Sbjct:  307 RLDEQKGVHLVHHAIYRSLFKNAQFVLLGSATERGIGAWFAHEKSYLNNN--PDVHIELGFNEELSHLIYAGADIIVVPSHYEPCGLTQMIGLKYGTVPVVRGVGGLVDTVFDRDYDPHK 424          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA1_NITOC (Glycogen synthase 1 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.371e-25
Identity = 58/116 (50.00%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDH 348
            RL   KG+ LI+HA++  L  G Q VLLG++    I  DF  L   L+        L + YDE L+H IYAGAD ++VPSI+EPCGLTQ++AM+YG++P+VR  GGL DTVFD ++
Sbjct:  304 RLDPQKGVELIRHALFYCLANGCQFVLLGASASNSINADFWYLKQYLNDD--PDCHLEIGYDEDLAHQIYAGADMLIVPSIYEPCGLTQMIAMKYGTVPIVRHVGGLADTVFDANY 417          
BLAST of EY675627 vs. ExPASy Swiss-Prot
Match: GLGA_ACTSZ (Glycogen synthase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=glgA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.801e-24
Identity = 61/122 (50.00%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    1 RLTHPKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHADRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQ 366
            RLT  KG+ L+       +++GGQ+++LGS   P +Q D+VN    L S H D   + + YDEPLSHL+ AG D ILVPS FEPCGLTQL  ++YG++P+VRKTGGL DTV D   +  +A+
Sbjct:  300 RLTEQKGVDLLLQCADEIVNQGGQLMILGSGA-PHLQ-DWVNW---LASQHPDNVGVWIGYDEPLSHLMVAGGDVILVPSRFEPCGLTQLYGLKYGTLPLVRKTGGLADTVVDSSAENIKAR 416          
The following BLAST results are available for this feature:
BLAST of EY675627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
SSY3_SOLTU4.723e-6471.51Soluble starch synthase 3, chloroplastic/amyloplas... [more]
GLGA_PARUW1.435e-2850.00Glycogen synthase OS=Protochlamydia amoebophila (s... [more]
GLGA2_METCA1.215e-2755.65Glycogen synthase 2 OS=Methylococcus capsulatus GN... [more]
GLGA2_ANASP1.343e-2650.85Probable glycogen synthase 2 OS=Anabaena sp. (stra... [more]
GLGA1_SYNJA1.343e-2650.00Glycogen synthase 1 OS=Synechococcus sp. (strain J... [more]
GLGA1_ANAVT2.291e-2650.00Glycogen synthase 1 OS=Anabaena variabilis (strain... [more]
GLGA2_SYNY35.105e-2649.15Probable glycogen synthase 2 OS=Synechocystis sp. ... [more]
GLGA1_SYNJB5.105e-2650.00Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 ... [more]
GLGA1_NITOC7.371e-2550.00Glycogen synthase 1 OS=Nitrosococcus oceani (strai... [more]
GLGA_ACTSZ2.801e-2450.00Glycogen synthase OS=Actinobacillus succinogenes (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-013-B04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675627 ID=EY675627; Name=EY675627; organism=Citrus sinensis; type=EST; length=936bp
CGCTTAACACATCCCAAAGGAATCCATCTCATCAAGCATGCAATTTGGCG
AACATTAGATCGCGGTGGTCAGGTTGTGTTGCTTGGTTCAGCTCCGGATC
CCCGAATCCAGAATGATTTTGTGAATTTAGCTAATGAGTTGCATTCTTCT
CATGCGGACCGCGCTCGTCTTTGTTTGACTTATGATGAGCCACTTTCCCA
CCTGATTTATGCTGGGGCCGATTTCATTCTAGTTCCTTCAATCTTTGAGC
CATGTGGACTGACACAACTTGTGGCTATGAGATATGGTTCAATACCAGTG
GTTCGGAAAACTGGAGGACTTTATGACACTGTATTTGATGTTGACCATGA
TAAAGAGAGAGCACAAGCCCTAGATCTTGAAACCAAATGGATTTAATTTT
GATGGAGCTGATATTGCTGGAGTCAATTTATGCTCTTAATAGGGCAATTT
CTGCTTTATTATGATGGTCGAGAGTGGGTTGGAAACTCCATTAATGCAGA
ACAGTGATGGAACAAGAACGGGTCTTGGAATCCCCCCTGCTCTTGACTAA
TATGGAAGCTTTTCCCGTGCACCCCGCAAGTGAAAAAAAAAATATTGATC
GGGGTGGAAAAAACCCCATGGCCACTCCTTTCCCCCTCCCAAGTTTTGGA
ACGGGTTCAAGGGGGAAAAATCTTTGGTTTTGAATATTTACCGCCCTTTT
ATATCACCCCAAATTTGGAATTAAAAAATTTTCCCCCACATTTGGGAATT
TTAAAAATTTTCCCCCCCAGGGGCCCGGGGAACGCTTTAAGAGGGGGGTT
CTCCACAATTTTTTCAGGGAGGGACAAAGAAATTATTAGGGCGCAGTTTT
TAAAATTTTTTTTTTTATTTTTTTTTAATCCGCGGTAGGACATACATGCG
CCCAATACGAGAAAAAAAAAAAACATAAAACTACCT
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