EY675624

Overview
NameEY675624
Unique NameEY675624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.635e-60
Identity = 113/132 (85.61%), Postives = 125/132 (94.70%), Query Frame = 1
Query:    1 PTFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 396
            PTFTL FSKGSSQ+IAQYYQLIRLGFEGY+NVMENC EN +VLKEG+EKT RFNIVSKD+GVP+VAFSLKD+  H+EFE++E+LRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLV DI+KVLHE
Sbjct:  311 PTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKDHSFHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHE 442          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.136e-60
Identity = 113/132 (85.61%), Postives = 124/132 (93.94%), Query Frame = 1
Query:    1 PTFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 396
            PTFTL FSKGSSQVIAQYYQLIRLG+EGY+NVMENC ENA VL+EGLEKTGRFNI+SK+ GVPLVAFSLKDN++H+EFE++E LRRFGWIVPAYTMP +AQHITVLRVVIREDFSRTLAERLV DI KVLHE
Sbjct:  312 PTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHE 443          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 5.817e-58
Identity = 110/132 (83.33%), Postives = 121/132 (91.67%), Query Frame = 1
Query:    1 PTFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 396
            PTFTL FSKGSSQVIAQYYQLIRLG EGYRNVMENC EN +VL+EGLEKT RFNIVSKDEGVPLVAFSLKD+  H EFE++++LRR+GWIVPAYTMP +AQHITVLRVVIREDFSRTLAERLV+DI KV+ E
Sbjct:  312 PTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRE 443          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.887e-51
Identity = 99/132 (75.00%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 PTFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 396
            PTFTL FSKGS Q+IAQYYQLIRLGFEGY+NVM+NC  NA VL EG+ K GRF+IVSKD GVP+VAFSL+D+ ++  FEV+E LRRFGWIVPAYTMP DA+HI VLRVVIREDFS +LAERLV DI K+L E
Sbjct:  313 PTFTLNFSKGSYQIIAQYYQLIRLGFEGYKNVMKNCLSNAKVLTEGITKMGRFDIVSKDVGVPVVAFSLRDSSKYTVFEVSEHLRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSE 444          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.496e-21
Identity = 50/132 (37.88%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 PTFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRH--DEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 390
            PT  + FS  +SQ+I QYY  +R GF+GY+ + E  H+ AM L E +EKTG F I++    +P+V + LK+N     + +++A+ L   GW VPAY +P + ++  + R+VIR DF   +A   V D+ + +
Sbjct:  312 PTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMYLAEEIEKTGMFEIMNDGAQLPIVCYKLKENSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAI 443          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.954e-21
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    1 PTFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 393
            PT  + FS+ +SQ+I QYY  +R GFEGYR + E   + A+ L + +EK+G F I++    +P+V + LKD  +     +++A+ L   GW VPAY +PAD     + R V R D    +AE    D    LH
Sbjct:  313 PTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEKSGYFEIINDGSNLPIVCYKLKDDLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADALH 445          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.687e-21
Identity = 49/132 (37.12%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 PTFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 390
            PT  + FS  +SQ+I QYY  +R GF+GY+ + E  H+ AM L + +EKTG F I++    +P+V + LK+  N+  + +++A+ L   GW VPAY +P + ++  + R+VIR DF   +A   V D+ + +
Sbjct:  312 PTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMFLAKEIEKTGMFEIMNDGSQLPIVCYKLKEDSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAI 443          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.686e-20
Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    1 PTFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 393
            PT  + FS+ +SQ+I QYY  +R GFEGYR + E   + A+ L + +EK+G F I++    +P+V + +K+  +     +++A+ L   GW VPAY +PAD     + R V R D    +AE    D    +H
Sbjct:  313 PTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADAIH 445          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.072e-19
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 1
Query:    1 PTFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 396
            PT  + FS+ +S +I QYY  +R GFEGYR + +   + A  L   +E+TG F+I +    +P+V + LKD  N +   +++A+ L+  GW VPAY +P + ++I + R V R D    +AE  + D    + E
Sbjct:  310 PTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLPIVCYKLKDDANVKWTLYDLADRLQMRGWQVPAYPLPKNLENIIIQRYVCRADLGFNMAEEFIQDFQASIQE 443          
BLAST of EY675624 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.389e-19
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    1 PTFTLTFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 396
            PT  + FS+ +S +I QYY  +R GFEGYR + +   + A  L   +E+TG F+I +    +P+V + LKD  N     +++A+ L+  GW VPAY +P   ++I + R V R D    +AE  + D    + E
Sbjct:  310 PTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIFNDGSHLPIVCYKLKDDANVNWTLYDLADRLQMRGWQVPAYPLPKSLENIIIQRYVCRADLGFNMAEEFIQDFQASIQE 443          
The following BLAST results are available for this feature:
BLAST of EY675624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE2_ARATH1.635e-6085.61Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_PETHY2.136e-6085.61Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE1_ARATH5.817e-5883.33Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE_SOLLC6.887e-5175.00Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE_LACLM1.496e-2137.88Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEC_LISIN1.954e-2137.59Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCE_LACLA5.687e-2137.12Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEC_LISMO3.686e-2035.34Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_LISIN1.072e-1935.07Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEB_LISMO2.389e-1935.07Glutamate decarboxylase beta OS=Listeria monocytog... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-013-A12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675624 ID=EY675624; Name=EY675624; organism=Citrus sinensis; type=EST; length=863bp
CCCACCTTCACCCTCACTTTCTCTAAAGGTTCTAGCCAAGTAATTGCTCA
GTACTACCAACTAATCCGCTTAGGTTTTGAGGGATACCGCAATGTGATGG
AGAATTGTCACGAAAATGCAATGGTGCTGAAAGAAGGACTAGAGAAAACT
GGCCGCTTCAACATTGTGTCAAAGGACGAAGGGGTTCCGTTGGTGGCATT
TTCTCTCAAGGACAACAAACGCCACGATGAATTCGAAGTGGCCGAATTGC
TGCGCCGTTTTGGTTGGATTGTGCCAGCGTACACCATGCCCGCTGACGCT
CAGCACATCACCGTGCTACGTGTCGTCATCAGGGAAGACTTCTCTCGCAC
ACTTGCCGAGCGCCTTGTACTCGACATCACAAAAGTGCTTCATGAAGCTT
GATTCGCTTTCCTTCAAAAGTGCTTGTACCTGCTTCTGAACAGAATGGAA
GGAATGGGAAAAGAAAAATGAAATTGGAACTCAGAGGGGAGTTCACTACT
TTACTGGGAGGAAATTCGTCTCCAAAAAGGAAAGCCAATAAAAAGAAATA
AAATTTGGTTAAGAAACCCCCCCCCCCCCCCCCTTTCATTTTTTTGAAAA
TTGTAAAAATTAAACATTATATAATTGGAATATGGAAACACGGAGGGGGA
TACCCGGTGAGAAGAATTTTAGAAAGTTGGATGTTTTTTTACTGAAAACC
CTATGGTAACACGGTAAAAGAACCCATCTTCAACAAAAACGATGATAACC
CCGAACGAATTCATGTATGTACCCTCTGAGAGAACGCTAAACAACCATAA
GAAAAAGAGAGAAAAAAAAACAAAAGAAAACATAGAGGGGGCGGGGCGCC
AACGACAGAAAGA
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