EY675621

Overview
NameEY675621
Unique NameEY675621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 7.365e-91
Identity = 165/225 (73.33%), Postives = 187/225 (83.11%), Query Frame = 3
Query:   12 ELMRILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPNPGNDPSCFWDHFYSHLRYGCGESRNILGQKPXGEKKFPGSNLHIGGRGKLGP 686
            ELMRIL+LVRNFLPGHHQV +GEWNVA +A+RAYDLEGKTVGTVG GRIG+LLLQRLKPFNCNLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NTPLTEKT+GMFDK+RIAK+KKGVLIVNNARGAIMDTQAVVDAC+SGH+AGYSGDVW PQPAPKDHPWRYMPN    P        + LRY  G ++++L +   GE  FP  N +I   G+L P
Sbjct:  157 ELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISGTTIDAQLRYAAG-TKDMLDRYFKGE-DFPAEN-YIVKDGELAP 378          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 2.143e-90
Identity = 158/214 (73.83%), Postives = 179/214 (83.64%), Query Frame = 3
Query:   12 ELMRILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPNPGNDPSCFWDHFYSHLRYGCGESRNILGQKPXGEKKFPGSN 653
            +LMRILLL+RNFLPGHHQ+ +GEWNVAG+A+R YDLEGKTVGTVG GRIG+LLLQRLKPFNCNL+YHDRVK+DP+LEKE GAK+EEDLD MLPKCD+VV+N PLTEKTRGMF+K+RIAKMKKGV IVNNARGAIMDTQAV DAC+SGH+AGY GDVW PQPAPKDHPWRYMPN    P C        LRY  G  +++L +   GE  FP  N
Sbjct:  154 QLMRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLMYHDRVKIDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGMFNKERIAKMKKGVTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHCSGTTIDGQLRYAAG-VKDMLDRYFKGE-DFPAQN 365          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 326.635 bits (836), Expect = 1.176e-88
Identity = 158/214 (73.83%), Postives = 179/214 (83.64%), Query Frame = 3
Query:   12 ELMRILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPNPGNDPSCFWDHFYSHLRYGCGESRNILGQKPXGEKKFPGSN 653
            ELMRIL+L+RNFLPG+ QV  GEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNCNLLYHDR+K+DP+LEKE GAK+EEDLD MLPKCD++V+NTPLTEKTRGMF+K+RIAKMKKGV+IVNNARGAIMDTQAV DACSSG +AGY GDVW PQPAPKDHPWRYMPN    P        + LRY  G  +++L +   GE  FP  N
Sbjct:  152 ELMRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAG-VKDMLDRYFKGE-DFPVQN 363          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 5.836e-88
Identity = 156/214 (72.90%), Postives = 180/214 (84.11%), Query Frame = 3
Query:   12 ELMRILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPNPGNDPSCFWDHFYSHLRYGCGESRNILGQKPXGEKKFPGSN 653
            ELMRIL+L+RNFLPG+ QV  GEWNVAG+A+RAYDLEGKTVGTVG GR G+LLLQRLKPFNCNLLYHDR++++P+LEKE GAKFEEDLD MLPKCD+VV+NTPLTEKTRGMF+K++IAKMKKGV+IVNNARGAIMDTQAV DACSSGH+AGY GDVW PQPAPKDHPWRYMPN    P        + LRY  G  +++L +   GE +FP  N
Sbjct:  153 ELMRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPFNCNLLYHDRLQINPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKEKIAKMKKGVIIVNNARGAIMDTQAVADACSSGHIAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAG-VKDMLDRYFKGE-EFPVEN 364          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 7.887e-85
Identity = 154/225 (68.44%), Postives = 182/225 (80.89%), Query Frame = 3
Query:   12 ELMRILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPNPGNDPSCFWDHFYSHLRYGCGESRNILGQKPXGEKKFPGSNLHIGGRGKLGP 686
            ELMRIL+L+RNF+PG++QV  GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF CNLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KKGVLIVNNARGAIM+ QAVVDA  SGH+ GYSGDVW+PQPAPKDHPWRYMPN    P        + LRY  G ++++L +   GE  FP  N +I   G+L P
Sbjct:  160 ELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAG-TKDMLERYFKGE-DFPTEN-YIVKDGELAP 381          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.150e-51
Identity = 98/174 (56.32%), Postives = 125/174 (71.84%), Query Frame = 3
Query:   15 LMRILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPNP 533
            LM IL+LVRNF+P H Q+  G W+VA  A   +DLEGK VGTVG GRIG+ +L+RLKPF+C  LLY+D   +  + E E G +   DL+ ML +CD+V +N PL EKT+G+F+K+ I+KMKKG  +VN ARGAI+  + V +A  SGHL GY GDVW PQPAP+DHP RY  NP
Sbjct:  129 LMTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRIGERVLRRLKPFDCKELLYYDYQPLSAEKEAEIGCRRVADLEEMLAQCDVVTINCPLHEKTQGLFNKELISKMKKGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPQDHPLRYAKNP 302          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.271e-50
Identity = 100/191 (52.36%), Postives = 131/191 (68.59%), Query Frame = 3
Query:   15 LMRILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK-----------------KGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPNP 533
            +M ILLLVRNF+P H Q+ +G+WNVA VA   +DLE K VGTVG GRIG+ +L+RLKPF+C  LLY+D   + P++EKE GA+  + L+ M+ +CD+V +N PL EKTRG+F+K+ I+KMK                 KG  +VN ARGAI+  + V +A  SGHL GY GDVW PQPAPK+HP RY  +P
Sbjct:  124 VMTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPFDCKELLYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTINCPLHEKTRGLFNKELISKMKPGKSALLYLIIPMLMYHKGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPKEHPLRYAEHP 314          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: FDH_PSESR (Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 6.755e-44
Identity = 92/199 (46.23%), Postives = 115/199 (57.79%), Query Frame = 3
Query:   15 LMRILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPNPGNDPSCFWDHFYSHLRYGCGESRNIL 611
            +M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+G  IVN ARG + D  AV  A  SG LAGY+GDVW PQPAPKDHPWR MP  G  P        +  RY  G +R IL
Sbjct:  156 VMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAG-TREIL 353          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 8.257e-42
Identity = 88/205 (42.93%), Postives = 126/205 (61.46%), Query Frame = 3
Query:   15 LMRILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPNPGNDPSCFWDHFY-----SHLRYGCGESRNIL 611
            +M +L+LVRNF+P H Q+ SG WNVA +A  ++D+EGK + T+G GRIG  +L+RL  FN   LLY+D   +  + E++ GA+   D+  ++ + DIV +N PL   ++G+ + + +   KKG  +VN ARGAI   + V  A  SG L GY GDVW PQPAPKDHPWR M N     +    H+      + +RY  G ++NIL
Sbjct:  128 VMTMLVLVRNFVPAHEQIISGGWNVAEIAKDSFDIEGKVIATIGAGRIGYRVLERLVAFNPKELLYYDYQSLSKEAEEKVGARRVHDIKELVAQADIVTINCPLHAGSKGLVNAELLKHFKKGAWLVNTARGAICVAEDVAAAVKSGQLRGYGGDVWFPQPAPKDHPWRSMANKYGAGNAMTPHYSGSVIDAQVRYAQG-TKNIL 331          
BLAST of EY675621 vs. ExPASy Swiss-Prot
Match: FDH2_YEAST (Formate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=FDH2 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.486e-38
Identity = 85/182 (46.70%), Postives = 112/182 (61.54%), Query Frame = 3
Query:   24 ILLLVRNFLPGHHQVTSGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEK---ETGAKFE---------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHLAGYSGDVWNPQPAPKDHPWRYMPN 530
            IL+L+RN+  GH Q  +GEW++AGVA   YDLE K + TVG GRIG  +L+RL  FN   LLY+D  ++  +      E    F          E L+ M+ + D+V +N PL + +RG+F+K  I+ MK G  +VN ARGAI   + V +A  SG LAGY GDVW+ QPAPKDHPWR M N
Sbjct:  133 ILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAFNPKKLLYYDYQELPAEAINRLNEASKLFNGRGDIVQRVEKLEDMVAQSDVVTINCPLHKDSRGLFNKKLISHMKDGAYLVNTARGAICVAEDVAEAVKSGKLAGYGGDVWDKQPAPKDHPWRTMDN 314          
The following BLAST results are available for this feature:
BLAST of EY675621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
FDH_SOLTU7.365e-9173.33Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH2_ORYSJ2.143e-9073.83Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH1_ORYSJ1.176e-8873.83Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH_HORVU5.836e-8872.90Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH_ARATH7.887e-8568.44Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH_NEUCR1.150e-5156.32Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
FDH_EMENI1.271e-5052.36Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH_PSESR6.755e-4446.23Formate dehydrogenase OS=Pseudomonas sp. (strain 1... [more]
FDH_PICAN8.257e-4242.93Formate dehydrogenase OS=Pichia angusta GN=FMDH PE... [more]
FDH2_YEAST2.486e-3846.70Formate dehydrogenase 2 OS=Saccharomyces cerevisia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-013-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675621 ID=EY675621; Name=EY675621; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGGAGCTTATGAGAATCCTCCTTCTTGTCCGTAATTTCTTA
CCTGGACACCATCAAGTTACCAGTGGGGAATGGAATGTTGCAGGTGTTGC
TTATAGAGCTTATGATCTTGAAGGAAAGACAGTGGGAACTGTTGGTTGTG
GACGCATTGGCAAGCTGTTGCTCCAACGACTTAAACCTTTCAATTGTAAT
CTCCTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGAC
TGGAGCAAAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACA
TAGTTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGAC
AAAGATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGC
TCGAGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTG
GACACCTTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCA
AAGGACCATCCCTGGCGTTACATGCCCAATCCAGGCAATGACCCCTCTTG
TTTCTGGGACCACTTTTATTCCCACCTACGCTATGGCTGCGGGGAATCAA
GGAATATCCTTGGACAGAAACCTCANGGGGAAAAAAAATTTCCTGGTTCA
AATTTACATATTGGAGGGCGGGGGAAACTGGGCCCCCCAATATCAAAAAA
TTTACAATTGTGGAAAAAACGAGTGTGTTGGGAATTAATTCTCCATGTTA
AAACAGGGAACTTTCAGAAATATAAGGGTCCACTGTTTTTTGGTACCCTT
CCGGGCCCTTAGGGGGAAAAAACGTTTATGATAAATTTTGTTGAAATCCA
CCCACTATTAAAACAAAGGGGAAATAATAGAAAACCCCCCACGAAAAAAG
GGAAAA
back to top