EY675615

Overview
NameEY675615
Unique NameEY675615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.935e-26
Identity = 62/108 (57.41%), Postives = 81/108 (75.00%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNKKTDW*RFN*LSGAYKGSPGKIAQTPAGTPTTS 477
            IFVKTLKGT F++EVKPED+V DVK  IE+VQG+DVYPAA+QMLI+QGKVL+D+TT+EEN+VAENSF+VI++ K+K          S A   +    +Q  +  P+TS
Sbjct:    3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPA--------SAAASSASAGTSQAKSIPPSTS 102          
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.442e-22
Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNKKTDW*RFN*LSGAYKGSPGKIAQTPAGTPTTSTAEWPWKSL 504
            IFVKTL G++F++EVKP D V DVK  IETV+G++ YPAA+QMLI+QGKVL+D+TTLEEN V ENSF+VI+++K K +        SGA   S    + T   T  T     P  S+
Sbjct:    3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASP-------SGASTASAPAPSATQPQTVATPQVSAPTASV 111          
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.667e-19
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381
            I VKTLKG++F +EV     V DVK  IET QG  +YPA QQMLI+QGKVL+DDTTL+EN+V ENSF+VI++ + K
Sbjct:    3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGK 78          
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.045e-16
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 1
Query:  160 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381
            VKTLKG+ F++ V P DT+  VK  IE  QG D YP  QQ+LI+ GKVL+D+T+L EN+V E  F+V++++K+K
Sbjct:    5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78          
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.011e-16
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  160 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381
            VKTLKG+ F++ V P DT+  VK  IE  Q  D YP  QQ+LI+ GKVL+D+TTL EN+V E  F+V++++K+K
Sbjct:    5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSK 78          
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.219e-14
Identity = 46/121 (38.02%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK-------KTDW*RFN*LSGAYKGSP-GKIAQTPAGTPTTSTAEWP 492
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E ++ E +FVV++VTK K        T     +  +     SP   +AQ PA TP  +    P
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPTSTP 123          
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.457e-14
Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E ++ E +FVV++VTK K
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.457e-14
Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E ++ E +FVV++VTK K
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.439e-13
Identity = 35/76 (46.05%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNK 381
            + +KTL+  +F +++ P++TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E ++ E +FVV++VTK K
Sbjct:    3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of EY675615 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.713e-12
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  154 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLEDDTTLEENEVAENSFVVIVVTKNKKTDW*RFN*LSGAYKGSPGKIAQTPAGTPTTSTA 483
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + +  + E +FVV++VTK K            A +G+      +P   P +ST+
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK------------AGQGTSAPPEASPTAAPESSTS 102          
The following BLAST results are available for this feature:
BLAST of EY675615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23C_ARATH1.935e-2657.41Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23D_ARATH6.442e-2251.28Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ6.667e-1961.84Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH4.045e-1652.70Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH9.011e-1652.70Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23B_RAT2.219e-1438.02UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE6.457e-1447.37UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23B_HUMAN6.457e-1447.37UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN1.439e-1346.05UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23A_HUMAN2.713e-1235.45UV excision repair protein RAD23 homolog A OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-013-A01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675615 ID=EY675615; Name=EY675615; organism=Citrus sinensis; type=EST; length=840bp
TCTATATGCTTCCTAACTTGTGCTTCGGTTTTCTCTCTCCGACTGTATCA
ATTATAGATAGACATTGAAAAGACCTTGCGGATCGGAAAACCAAATAAAA
TAGTTGAATTCGAGAGACCCAACGGAACGTAGAAAAAGAAGAAGATGATG
AAGATTTTCGTTAAAACTCTCAAAGGAACTTCTTTCGACGTCGAAGTGAA
ACCTGAAGACACGGTCTTTGATGTGAAAATGAAGATAGAAACTGTTCAAG
GATCGGATGTTTATCCTGCTGCACAACAGATGCTGATTTATCAGGGGAAA
GTCCTCGAAGATGATACTACACTGGAAGAGAACGAAGTAGCTGAAAATAG
TTTTGTTGTTATTGTGGTTACGAAGAATAAGAAGACCGACTGGTGAAGGT
TCAACTGACTCAGCGGCGCCTACAAAGGGTCCCCAGGTAAAATTGCCCAA
ACCCCTGCAGGGACCCCAACAACAAGTACCGCAGAATGGCCGTGGAAATC
ACTGAGAGGCCGAAGCCGGGTAGTACACACGGGCCGGGCGAGGGGTTAGG
AGTACCACAGATACAGCGACGACAAGGAGTGAGGGTGTTTGGGCTTTCTT
GCCCTAATTCTTTTTCCTNTTAACCATCTCATATTGCCCCCCCCCCCCTC
TCCCTCACTATAGCATAAACCCAACATCATACTAACACAAACCCAATCTC
TACCCCACTCAAGGGCAGAGGAGACGCCCCGGGACGCCAGAAAAAGGAAG
GCAGGAAGAGGAGGAAAGGGAAGGAGAAAGGAGGAAGAAAGCGAAGAGGT
AGGACAGGCAGGGAGTGAGGACAGACAAACAGACAAGGAG
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