EY675608

Overview
NameEY675608
Unique NameEY675608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675608_ssr124 microsatellite EY675608_ssr124:124..135. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY675608 vs. ExPASy Swiss-Prot
Match: RL222_ARATH (60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.373e-31
Identity = 63/89 (70.79%), Postives = 71/89 (79.78%), Query Frame = 2 
Query:  164 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLQVIASNKDR 430
            +F IDC KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSVT+TREK+KITVT+D  FS              HNVRDWL+VIA+NKDR
Sbjct:   17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDR 105

HSP 2 Score: 30.0314 bits (66), Expect = 1.373e-31
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 3 
Query:  435 VYELRYFHIAENEG 476
            +YELRYF+IAENEG
Sbjct:  107 LYELRYFNIAENEG 120
[Close]
BLAST of EY675608 vs. ExPASy Swiss-Prot
Match: RL223_ARATH (60S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.927e-30
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 2 
Query:  164 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLQVIASNKDR 430
            +F IDC KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSV++TREK+KITVT+D  FS              HNVRDWL+VIA+NKDR
Sbjct:   17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDR 105

HSP 2 Score: 27.7202 bits (60), Expect = 1.927e-30
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  435 VYELRYFHIAENE 473
            +YELRYF+IAENE
Sbjct:  107 LYELRYFNIAENE 119
[Close]
BLAST of EY675608 vs. ExPASy Swiss-Prot
Match: RL221_ARATH (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.561e-22
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 2 
Query:  164 TFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLQVIASNKDR 430
            +FVIDC KPV+D I++IA+LEKFLQERIKV GKAGALG+SV++TR   KI V ++SNFS              +N+RDWL+VIASNKD+
Sbjct:   19 SFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDK 107
[Close]
BLAST of EY675608 vs. ExPASy Swiss-Prot
Match: RL22_RAT (60S ribosomal protein L22 OS=Rattus norvegicus GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.636e-17
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 2 
Query:  167 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLQVIASNKD 427
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS              +N+RDWL+V+A++K+
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKE 108

HSP 2 Score: 21.557 bits (44), Expect = 1.636e-17
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3 
Query:  438 YELRYFHIAENE 473
            YELRYF I ++E
Sbjct:  110 YELRYFQINQDE 121
[Close]
BLAST of EY675608 vs. ExPASy Swiss-Prot
Match: RL22_PIG (60S ribosomal protein L22 OS=Sus scrofa GN=RPL22 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.766e-17
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 2 
Query:  167 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLQVIASNKD 427
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS              +N+RDWL+V+A++K+
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKE 108

HSP 2 Score: 21.557 bits (44), Expect = 2.766e-17
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3 
Query:  438 YELRYFHIAENE 473
            YELRYF I ++E
Sbjct:  110 YELRYFQINQDE 121
[Close]
BLAST of EY675608 vs. ExPASy Swiss-Prot
Match: RL22_MOUSE (60S ribosomal protein L22 OS=Mus musculus GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.766e-17
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 2 
Query:  167 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLQVIASNKD 427
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS              +N+RDWL+V+A++K+
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKE 108

HSP 2 Score: 21.557 bits (44), Expect = 2.766e-17
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3 
Query:  438 YELRYFHIAENE 473
            YELRYF I ++E
Sbjct:  110 YELRYFQINQDE 121
[Close]
BLAST of EY675608 vs. ExPASy Swiss-Prot
Match: RL22_MACFA (60S ribosomal protein L22 OS=Macaca fascicularis GN=RPL22 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.766e-17
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 2 
Query:  167 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLQVIASNKD 427
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS              +N+RDWL+V+A++K+
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKE 108

HSP 2 Score: 21.557 bits (44), Expect = 2.766e-17
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3 
Query:  438 YELRYFHIAENE 473
            YELRYF I ++E
Sbjct:  110 YELRYFQINQDE 121
[Close]
BLAST of EY675608 vs. ExPASy Swiss-Prot
Match: RL22_HUMAN (60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.766e-17
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 2 
Query:  167 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLQVIASNKD 427
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS              +N+RDWL+V+A++K+
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKE 108

HSP 2 Score: 21.557 bits (44), Expect = 2.766e-17
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3 
Query:  438 YELRYFHIAENE 473
            YELRYF I ++E
Sbjct:  110 YELRYFQINQDE 121
[Close]
BLAST of EY675608 vs. ExPASy Swiss-Prot
Match: RL22_CHICK (60S ribosomal protein L22 OS=Gallus gallus GN=RPL22 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.766e-17
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 2 
Query:  167 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLQVIASNKD 427
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   VT+ R K+KITVTS+  FS              +N+RDWL+V+A++K+
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKE 108

HSP 2 Score: 21.557 bits (44), Expect = 2.766e-17
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3 
Query:  438 YELRYFHIAENE 473
            YELRYF I ++E
Sbjct:  110 YELRYFQINQDE 121
[Close]
BLAST of EY675608 vs. ExPASy Swiss-Prot
Match: RL22_ICTPU (60S ribosomal protein L22 OS=Ictalurus punctatus GN=rpl22 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.766e-17
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 2 
Query:  167 FVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDS-VTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLQVIASNKD 427
            F +DC  PVED IMD A+ E+FLQERIKV GKAG LG   V++ R K+KITVTSD  FS              +N+RDWL+V+A+ K+
Sbjct:   21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVSIERSKSKITVTSDIPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKE 108

HSP 2 Score: 21.9422 bits (45), Expect = 2.766e-17
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 3 
Query:  426 TELVYELRYFHIAENE 473
            T+  YELRYF I ++E
Sbjct:  106 TKESYELRYFQINQDE 121
The following BLAST results are available for this feature:
BLAST of EY675608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL222_ARATH1.373e-3170.7960S ribosomal protein L22-2 OS=Arabidopsis thalian... [more]
RL223_ARATH1.927e-3069.6660S ribosomal protein L22-3 OS=Arabidopsis thalian... [more]
RL221_ARATH1.561e-2259.55Putative 60S ribosomal protein L22-1 OS=Arabidopsi... [more]
RL22_RAT1.636e-1752.2760S ribosomal protein L22 OS=Rattus norvegicus GN=... [more]
RL22_PIG2.766e-1752.2760S ribosomal protein L22 OS=Sus scrofa GN=RPL22 P... [more]
RL22_MOUSE2.766e-1752.2760S ribosomal protein L22 OS=Mus musculus GN=Rpl22... [more]
RL22_MACFA2.766e-1752.2760S ribosomal protein L22 OS=Macaca fascicularis G... [more]
RL22_HUMAN2.766e-1752.2760S ribosomal protein L22 OS=Homo sapiens GN=RPL22... [more]
RL22_CHICK2.766e-1752.2760S ribosomal protein L22 OS=Gallus gallus GN=RPL2... [more]
RL22_ICTPU2.766e-1752.2760S ribosomal protein L22 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-012-H03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675608 ID=EY675608; Name=EY675608; organism=Citrus sinensis; type=EST; length=948bp
CCCACATAGCTAACCCCCCTTTTTAACGTTCGTTCTTGAGACAGCTCCAA
GCTGCCCTGCTCTTCTCCTGTAAATTGTACAATTCGTAGTGCGGCGGAGC
AGAGACGGGAAAATGAGTCGCGGAGCAGCAGCAGCAGGGGTGAAGGGGAA
GAAAAAGGGAGCGACCTTCGTGATAGACTGCGGGAAGCCTGTGGAGGACA
AAATCATGGACATTGCGTCCTTGGAAAAGTTCCTCCAGGAGCGGATCAAG
GTCGGCGGCAAGGCTGGTGCCCTTGGGGATTCAGTTACCGTCACCCGTGA
GAAGACCAAGATCACCGTCACTTCTGACAGCAACTTCTCTAAGAGGTATC
TTAAATATTTGAACCAGAAGTACTTGAAGAAACACAATGTAAGAGATTGG
CTCCAAGTAATTGCTTCAAACAAGGACCGAATTGGTCTATGAGCTGCGAT
ACTTTCACATTGCTGAAAATGAGGGGATAGGAGGAAGAACTGAGATCCAT
TTCATTATTTCCTCCTATTATATCTAATTCTGATTACTTGGTTCTAGCTC
CTTTTTTCTTTTTTTCCCCCGGCGATCAAAATCTGTGGAACCTGGTTTGA
ATTTGTTTAATAAAAATCATTCTTAATTTTAAGTTTCCTGGTTGAAAATT
TTGGTTTATACTTTTTAAAAAATTAAAGGTTTTTTTTTTTTTTTTTGGGG
GGTGGAAAAAAAAGGCCTTTAAAAAACATTCGCCAAGTTTTTTTTTTCTC
CCACGCGAAGAAAAAAAAAAGAAAAATATAATTGAGAAAAAGAAAGGAGA
TGAAGGCAATCATAGGTGTGAGATTGACATGGNGTAGGGAATGAGGGCAA
GATGGGGAAATAAGTTGCTATATCAGATGACGTTTGGCCTATAGATGAAA
GCAATCGACATCGGATAGTATTTTGCAATAGCAGTGCTGTATAATGAA
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