EY675602

Overview
NameEY675602
Unique NameEY675602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1067
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675602 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.832e-56
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 3
Query:  216 LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKASLIPQETALAWFQTGVIAPSG 440
            LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEILGKA LIPQETALAWFQTGVI P+G
Sbjct:   70 LPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAG 144          

HSP 2 Score: 92.0485 bits (227), Expect = 3.832e-56
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  430 PPAGTYNYWAKPYTLFVLKMASMGICQHRKFQEWANPGSRGRQYILRIKKKLGKGTGDSAKHGRNP*SHPSGVLGKD 660
            PPAGTYNYWA  YTLFVL+MA MG  +HR+FQ+WA PGS G+QY L ++K LG G+GD A  G  P  +P G  GKD
Sbjct:  141 PPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLG-GSGDPAYPG-GPLFNPLG-FGKD 214          
BLAST of EY675602 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.168e-55
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 3
Query:  213 SLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKASLIPQETALAWFQTGVIAPSG 440
            SLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE LGK  LIPQETALAWFQTGVI P+G
Sbjct:   71 SLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG 146          

HSP 2 Score: 88.5817 bits (218), Expect = 4.168e-55
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  430 PPAGTYNYWAKPYTLFVLKMASMGICQHRKFQEWANPGSRGRQYILRIKKKLGKGTGDSAKHGRNP*SHPSGVLGKD 660
            PPAGTYNYWA  YTLFVL+MA MG  +HR+FQ+WA PGS G+QY L ++K  G G+G+ A  G  P  +P G  GKD
Sbjct:  143 PPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFG-GSGNPAYPG-GPFFNPLG-FGKD 216          
The following BLAST results are available for this feature:
BLAST of EY675602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CB13_SOLLC3.832e-5692.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA4.168e-5590.79Chlorophyll a-b binding protein 3, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-012-G07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675602 ID=EY675602; Name=EY675602; organism=Citrus sinensis; type=EST; length=1067bp
CCACGCGTCCGTTTTTCAGCAAGGAGCACACAGACCGTTGTGGTTTGCAT
CCAAACAAAGCCTTTCATCCCTGGATGGCAGGTAACTTATCTATGCTTTT
TGGCATGAGCAATGATATTTGGACAGAAAAATTTGATAGCGCGCTTGTTT
CTGTCGGCGCTCTGTCAGCACTTCTGCATTTTTGCATCATTTAGATGTAC
ATTTACTTTTGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCT
CTCAGACCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCT
ACGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCC
ATTGCACCGGAGATTCTTGGCAAGGCAAGCCTCATTCCGCAAGAAACTGC
CCTGGCCTGGTTCCAAACCGGTGTGATCGCCCCCAGCGGGAACATACAAC
TACTGGGCAAAACCTTACACACTTTTCGTCCTGAAAATGGCAAGCATGGG
AATTTGCCAGCACCGGAAATTCCAAGAATGGGCAAATCCAGGATCAAGGG
GAAGGCAATACATTCTCCGAATCAAAAAAAAACTTGGGAAGGGTACCGGG
GATTCGGCTAAACACGGAAGGAACCCCTAATCCCACCCCTCCGGGGTCTT
GGGAAAAGATTGAACAGGTCATGGGAGGGATTTCAGAGCTCGCGAGAATT
GGAGAAAGGGGAAAAATGGGAAAAAGAGGGATAAATTGGGGGGATAATTT
ATTTACTAAGAGTTTTGGTTCAAAGGGGATCGGGGGCAATATACAAAAAA
AACAATATGGACTAACAGTGGAATAAGAAATAGAGGGCGAAAAAGAAATG
ATGAATTATAAAATAAACCACAAAATATTGACGAATAAGAGAAGAAAATA
AATCAAGAGTCGCCAAAAAACAAGGGGAGATGCGTAGAATATATTGTGCG
TGAGCGCGTTCTGATTATTCAAGTACCGCGCTAAAAGTTAAGACGAGGTG
ACAGGATACGCAAGTGAATGCTCTTACCAAAGCCAAGATGAGCAGGACAA
TCAATGGAGAGCGGCGA
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