EY675596

Overview
NameEY675596
Unique NameEY675596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1027
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675596_ssr80 microsatellite EY675596_ssr80:80..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY675596 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 7.148e-38
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 3 
Query:  141 MPSLEEELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVDSGSRYFSASWGGIQWEKHVK 380
            MPS+E+ELFPSTPGKFKI+RSN   RQ HRCF STSTMFLWALFL+ALTASYLSFQSFVDSGSRY +ASWGGIQWEK V+
Sbjct:    1 MPSIEDELFPSTPGKFKIDRSN---RQLHRCFASTSTMFLWALFLIALTASYLSFQSFVDSGSRYLTASWGGIQWEKQVR 77

HSP 2 Score: 37.7354 bits (86), Expect = 7.148e-38
Identity = 27/70 (38.57%), Postives = 36/70 (51.43%), Query Frame = 1 
Query:  379 RSSAQIHRSGGMSVLGYRCSRFRWDPRGLWL*KXXXXXXXXLDNFHSYFDSRIEEGEGKDLVEQPRGFFV 588
            R+SAQIHRSGG+SVL    + F      L L +        LDNF++Y+D  ++      L    RG FV
Sbjct:   77 RTSAQIHRSGGISVLVTGATGFVGSHVSLAL-RKRGDGVVGLDNFNNYYDPSLKRARRSLL--SSRGIFV 143
The following BLAST results are available for this feature:
BLAST of EY675596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GAE1_ARATH7.148e-3883.75UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-012-F09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675596 ID=EY675596; Name=EY675596; organism=Citrus sinensis; type=EST; length=1027bp
ATTTGCTCTGCATCTACAACTGTCACACCATTTCAATCCAATCCAAAACC
AAATCCAACCCGGTTTCACCTTTCCTTCTAAACAAACAAACCAACCCCGA
AAAGGGAAAATAATAAAAGATTCGAAGATTCTAGAGAAAAATGCCGTCTT
TAGAAGAGGAGCTGTTCCCGTCGACGCCGGGGAAATTCAAGATTGAAAGA
TCCAACACTATGAACCGCCAGTTTCACCGGTGTTTCACCTCAACGAGTAC
CATGTTCTTGTGGGCTCTTTTCTTGGTTGCTTTAACGGCGTCGTATTTGA
GTTTTCAGTCTTTTGTCGATTCCGGTAGCCGGTACTTTTCCGCTTCTTGG
GGAGGTATCCAGTGGGAGAAACATGTCAAGGAGTTCCGCTCAGATCCATC
GGTCTGGTGGGATGTCGGTGCTGGGTTACCGGTGCAGCCGGTTTCGTTGG
GACCCACGTGGTCTTTGGCTTTAAAAAAACGGCGGAAACGGCGTCGTTGG
ACTCGACAATTTCCATAGCTACTTCGATTCGCGCATTGAAGAAGGGGAAG
GAAAGGATTTGGTGGAACAACCCAGGGGGTTTTTCGTGAATTAGAAGGGG
ATATTTTTGAAATCGAAATTTTCATTACACAAGTCCTTTTGACCCGAGGG
AGTATTAACGCAACGGTAATACATGTTAGTCGGGCGATATAAGCCAGAAT
AGTAAATACGAAAAGGACAAATAACCCAGTGGCCGGAAGGGACAGAGTAA
AAAATACGGGTGGAGCGCCGCAGAGCCAACGTAGAAGGAATGGAAAGAAT
GTAGCCAAACAACACAACAATAAACAAAAGTATATGGGGCACCATAATGT
GTGGTCTCGACTCATATGCATATAGGCGAACGTAATAAGACTCTACGGGA
TTTTACGTACGGGTGGGATAGCAAGGGGTGCGAATGTACCAGTGTCCCGT
ACGGGTGAAACTATGATGGAGGCTNCCATTGAATTACAACACGCGCTGTG
TGCGCGAGTCAACGGATTGATGGCGCT
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