EY675583

Overview
NameEY675583
Unique NameEY675583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length985
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675583_ssr101 microsatellite EY675583_ssr101:101..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675583 vs. ExPASy Swiss-Prot
Match: RBP9X_DROME (Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.110e-18
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  177 VSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLFRGQGKGEAFGPSFTTNDTVGGGIN 497
            +S + L V Y  V     D   V+   P P    +YYFE+ +   G  G + IG T++ F+M R PGW+  S GYHGDDG  F   G G+ +GP+FTT D +G  +N
Sbjct:  433 LSQNNLRVTYKGVGKQHSDAASVRTAYPIPSSCGLYYFEVRIISKGRNGYMGIGLTAQQFRMNRLPGWDKQSYGYHGDDGNSFSSSGNGQTYGPTFTTGDVIGCCVN 539          
BLAST of EY675583 vs. ExPASy Swiss-Prot
Match: RBP10_DANRE (Ran-binding protein 10 OS=Danio rerio GN=ranbp10 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.603e-17
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 3
Query:  168 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLFRGQGKGEAFGPSFTTNDTVGGGIN 497
            ++ +S + L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  F   G G+ +GP+FTT D +G  +N
Sbjct:   53 YIGLSQNNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 162          
BLAST of EY675583 vs. ExPASy Swiss-Prot
Match: RBP10_MOUSE (Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.735e-17
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  168 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLFRGQGKGEAFGPSFTTNDTVGGGIN 497
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  F   G G+ +GP+FTT D +G  +N
Sbjct:   93 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 202          
BLAST of EY675583 vs. ExPASy Swiss-Prot
Match: RBP10_HUMAN (Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.735e-17
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  168 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLFRGQGKGEAFGPSFTTNDTVGGGIN 497
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  F   G G+ +GP+FTT D +G  +N
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 174          
BLAST of EY675583 vs. ExPASy Swiss-Prot
Match: RBP10_BOVIN (Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.735e-17
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  168 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLFRGQGKGEAFGPSFTTNDTVGGGIN 497
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  F   G G+ +GP+FTT D +G  +N
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 174          
BLAST of EY675583 vs. ExPASy Swiss-Prot
Match: RANB9_MOUSE (Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.571e-17
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  168 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLFRGQGKGEAFGPSFTTNDTVGGGIN 497
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  F   G G+ +GP+FTT D +G  +N
Sbjct:  102 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 211          
BLAST of EY675583 vs. ExPASy Swiss-Prot
Match: RANB9_HUMAN (Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.571e-17
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  168 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLFRGQGKGEAFGPSFTTNDTVGGGIN 497
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  F   G G+ +GP+FTT D +G  +N
Sbjct:  177 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 286          
BLAST of EY675583 vs. ExPASy Swiss-Prot
Match: RANB9_DANRE (Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.571e-17
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  168 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLFRGQGKGEAFGPSFTTNDTVGGGIN 497
            ++ +S + L V Y        D   V+A  P P    VYYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  F   G G+ +GP+FTT D +G  +N
Sbjct:   59 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGVYYFEVKIISKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 168          
BLAST of EY675583 vs. ExPASy Swiss-Prot
Match: RANB9_XENLA (Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.157e-16
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  168 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLFRGQGKGEAFGPSFTTNDTVGGGIN 497
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHGDDG  F   G G+ +GP+FTT D +G  +N
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 141          
BLAST of EY675583 vs. ExPASy Swiss-Prot
Match: RANB9_XENTR (Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.736e-16
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  168 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLFRGQGKGEAFGPSFTTNDTVGGGIN 497
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHGDDG  F   G G+ +GP+FTT D +G  +N
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLSRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVN 141          
The following BLAST results are available for this feature:
BLAST of EY675583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RBP9X_DROME1.110e-1840.19Ran-binding proteins 9/10 homolog OS=Drosophila me... [more]
RBP10_DANRE1.603e-1737.27Ran-binding protein 10 OS=Danio rerio GN=ranbp10 P... [more]
RBP10_MOUSE2.735e-1737.27Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 ... [more]
RBP10_HUMAN2.735e-1737.27Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 ... [more]
RBP10_BOVIN2.735e-1737.27Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE... [more]
RANB9_MOUSE3.571e-1737.27Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE... [more]
RANB9_HUMAN3.571e-1737.27Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE... [more]
RANB9_DANRE3.571e-1738.18Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=... [more]
RANB9_XENLA5.157e-1635.45Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 ... [more]
RANB9_XENTR6.736e-1635.45Ran-binding protein 9 OS=Xenopus tropicalis GN=ran... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-012-E06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675583 ID=EY675583; Name=EY675583; organism=Citrus sinensis; type=EST; length=985bp
CCACGCGTCCGCAAACACACTAACAACTCCCTAATGAAGATCTCGGCTTG
CACTTCCTCGCGCTGGCGCGGGCTTCTTCGAGCTCGATGGGCGGAAAGCG
GGAGGAGGAGGATTTTGAGGAAGAAGAGGTGCCGACGGAGCTGACCACGA
TCAACAGCTCTGGAGGGTTCCTGGTGGTTTCGCCGGATAAGTTGTCGGTC
AAGTACACTAGCGTCAATCTGCACGGCCATGACGTCGGCGTCGTCCAAGC
TAACAAGCCGGCTCCTGTTAAGCGGCTTGTTTATTACTTTGAGATTTACG
TGAAGGACGCTGGTGCCAAGGGCCAGATTGCCATTGGATTTACCAGTGAG
TCTTTCAAGATGCGGAGGCAACCAGGGTGGGAAGCGAACAGTTGTGGATA
CCATGGGGATGATGGATTGCTTTTTCGTGGACAAGGAAAGGGAGAGGCCT
TTGGCCCCTCGTTTACAACTAATGATACTGTTGGGGGGGGTATTAACCAT
TGCTTCCCAGGAATTTTTTTTTCCCTAATATGGGTTCTTTATTAGGAACA
TTGTAACAAGGCATCAAGGGGTCCTTGTTTCCAACCATTGCTGGTTCACA
GCCCAAAACAAGGAGGGTCTTGGTCACACTCTCGGCCAGAAAAAATTTGG
CTTTTTTGGTTCTTAGGGATATCAAGGCCCCCAGAAAAGGTATGAAACGC
CACAAATGGACTTTTGGAAGAGATTTTCCCTCCCCCCCCTAATGGGTCGG
TTATTGGGACTTTGGTTCCCCCCTTACGTTTCACAACTTTTAGGGCTATT
AGAGAAGAAACCCCTCGCTTTCTTTTTTGGATTTTTGGACTGGGTGGAAA
CCAGTTGGGGTGCTCCCCCCCGGCTTGTTTTGTGGAGCCCCCAGAGAAAA
AAAGAGGGCTTTGTTGTCTTGAGCACAAAAAGAAAAAGGGGTGGGAAAAT
CGCGCTTGTTTGTGATCGCACTCACCAGAGTGGAC
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