EY675396

Overview
NameEY675396
Unique NameEY675396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1017
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675396_ssr224 microsatellite EY675396_ssr224:224..235. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 8.002e-28
Identity = 56/70 (80.00%), Postives = 67/70 (95.71%), Query Frame = 2
Query:  161 RPATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            RPATF+EDFK  WS++H+RQ+E G+AIQLVLDQ++GCGFASKR+YLFGRVSMKIKL+PGDSAGTVTAFY+
Sbjct:   31 RPATFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYM 100          
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 3.362e-26
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 2
Query:  161 RPATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            RPA F +DF++ WSD H+ QI+GGRAIQL LD +SGCGFASK+QYLFGRVSMKIKL+PGDSAGTVTAFY+
Sbjct:   30 RPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYM 99          
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.768e-15
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 2
Query:  173 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            F ++++ +W+  H++ + GG  + LVLD++SG GF SK+ YLFG  SMK+KLV GDSAG VTAFY+
Sbjct:   32 FWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYL 97          
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.035e-14
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 2
Query:  167 ATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            + F ++F +TW D   +   GG  + L LDQ SG GF SK++YLFGR+ M++KLV G+SAGTVTA+Y+
Sbjct:   26 SNFFDEFDLTWGDHRGKIFNGGNMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYL 93          
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.035e-14
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  170 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            +F + F +TW        E G+ +   LD+ SG GF SK++YLFG++ MKIKLVPG+SAGTVTA+Y+
Sbjct:   26 SFYDSFDITWGAGRANIFESGQLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYL 92          
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.589e-14
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  173 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            F  ++  TW+  H++ + GG  IQL LD+ +G GF SK  YLFG  SM IKLVPGDSAGTVTAFY+
Sbjct:   31 FGRNYVPTWAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYL 96          
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  170 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            TF  +F +TW D   + +  G  + L LD+ SG GF +K++YLFG++ M++KLVPG+SAGTVTA+Y+
Sbjct:   29 TFDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYL 95          
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  173 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            F ++++ +W+  H++ + GG    L+LD++SG GF SK+ YLFG  SMK++LV GDSAG VTAFY+
Sbjct:   33 FWKNYEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYL 98          
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  170 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            +F +DF +TW     +   GG+ + L LD+ SG GF SK++YLFGR+ M++KLV G+SAGTVTA+Y+
Sbjct:   31 SFYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYL 97          
BLAST of EY675396 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.913e-13
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  173 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYV 370
            F +++  TW+  H+  + GGR +QL LD+ +G GF ++  YLFG  SM IKLV GDSAGTVTAFY+
Sbjct:   32 FDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYL 97          
The following BLAST results are available for this feature:
BLAST of EY675396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
XTH6_ARATH8.002e-2880.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH3.362e-2677.14Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC7.768e-1553.03Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH15_ARATH5.035e-1451.47Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH5.035e-1450.75Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN8.589e-1457.58Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH25_ARATH1.465e-1349.25Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC1.465e-1350.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN1.465e-1350.75Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH_WHEAT1.913e-1353.03Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-010-A04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675396 ID=EY675396; Name=EY675396; organism=Citrus sinensis; type=EST; length=1017bp
CCCACGCGTCCGCCACACCTTTAAAAAAAGATCTCTTTCTAATTAGTAAC
AGATAATACCTTATTGTACGGCTTGTTTTACAGCTATGGCTATCCTAAGA
AATGCAATAGCATTATTTGTGTTGCTTTACTGTCTTGTATCCTGCTCTTG
CGTTTTAGGGCGACCGGCTACTTTTCTTGAGGATTTTAAAGTCACATGGT
CCGATGCCCATCTCAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAGTT
CTAGACCAAAATTCAGGATGTGGGTTTGCCTCCAAAAGGCAGTACTTGTT
CGGGCGTGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAA
CTGTCACTGCATTTTATGTGTGTTAGTTAACTGTGTATATTTAGCGTTTA
ATTTATTGTGCGATTCTCTGTTTCAAAAGTTGAAATTTTGGCACATGAAA
GGATACTAACTTTTAATTATTTTTATTTTGGTTTCTTAATTAATTTTTTC
AAAAATGAAATTCCACACCGAAAATGTGAGAAACAACCTTGATTTTGAAT
TCCTGGGGAAACCGAAAGGGGTCAGCCTTTCCACGGCCCCAACCAATAAT
TTTTGCAAATTGGAAAAAGGGAATAAAAAACAAAAGAGGGAACCCCTCTG
GTTTGACCCTGGCTTCCAAATTTTCACCTTTTTAACCCTTTTCTCCTGGG
AAACATCACCCTAATTTGTCTTTCATTAGAGGATTGAAGTGGGCCCTATC
AGGGGGTTTAAAAAAACCATGGGAAAAGGGGGCCACCTTTTCCAAAAGGA
AACAACACCCCATGGGGGGGTGGTTAACCCCCACGCCGTAGGGGGGAAAA
CAAAAAAACGAAGTGGGGCAAAAAAAAAAAAGGTGGGGTCCTCAAAAAAA
AAAAAATAAAGAATGGGGAAAAGCAAAACCACTCTCCCTTTTTTTTTTTT
ACATATATATTTTAATGACTAGAAAGCATTATTTTTTATATAAAAGTTGA
TAGAGGGGGGGTGGGAG
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