EY675386

Overview
NameEY675386
Unique NameEY675386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675386 vs. ExPASy Swiss-Prot
Match: PP310_ARATH (Pentatricopeptide repeat-containing protein At4g14190, chloroplastic OS=Arabidopsis thaliana GN=At4g14190 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.700e-13
Identity = 35/68 (51.47%), Postives = 51/68 (75.00%), Query Frame = 2 
Query:  188 SLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIKFLKNSSRARQI 391
            S++  +T+ T+LL    H H+ L++L +RL+   SCPL++LQ DGDW+KDHFWAVI+FL+ SSR  +I
Sbjct:   51 SINGDATQPTSLL----HHHRFLSSLTRRLSLSGSCPLRLLQEDGDWSKDHFWAVIRFLRQSSRLHEI 114
The following BLAST results are available for this feature:
BLAST of EY675386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP310_ARATH5.700e-1351.47Pentatricopeptide repeat-containing protein At4g14... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-H05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675386 ID=EY675386; Name=EY675386; organism=Citrus sinensis; type=EST; length=862bp
GAGAAGAAATAACACGGGCCTTTAGATGGATAGTGTTGTATCCCTGCATC
TGCATAACAACAATAATACCCATTACAAAGTCAGACTCAACAAAAATAAG
AAGAATAAGCTGACACATAACCGCGTCTTCTTCTCCAAAATCCTAATCAG
AAAACCCATCAGCTGTTGTTGTTTGTCATCGGCTCCGTCACTTGATTATC
ATTCGACAAAACACACGACCCTTCTTGTTGAGAGCTACCATGAGCACCAA
GCACTCAACGCATTAATTCAGAGGCTCAACAAGAAAGTTTCATGCCCTCT
TCAAATTCTTCAACACGATGGAGATTGGACCAAAGATCACTTTTGGGCTG
TCATCAAATTTCTCAAAAATTCCTCGAGGGCCAGGCAAATTCCCCGGTAC
TCCGGCTCTCTCCTATTTAGTGGGGGAGGGGGAAAAATATGGGGAGTCTT
TCGGGGTGGGCCGGAAAAAAAAAAAAAAAAGGGGGGGGCGCTCTAAAGGG
AACAAGCTTAAGTAAGCGGGGATGGAAAGTCAAAACCCTTTTAAAGGGGG
CCCAAAATTTAATTTCCGGGGCGCCGTTTTTTAAAAGTTCGGGGCGGGGA
AAACCCGGGGGGTTTCACATATTAATACCGTTGGGAGACATACCCCCTTT
TTCGCGGGGGGGGAAAAAACAAAAGAGGGCCCCGACAATCTGCCCCTCCC
CCAATGTGGCCGCCCCCGGAAGGGGAAAAGGGGGAGGCCCCTTTGGACGG
GCGAATTTAACCCCGGGGGGGGGGGGGGGGGGGTTAGGAAGAAAAAAGAG
GAGAAATGGTAAGGGAGAGAAAAAAGCAGCGGGAGCATGTGAAGATATTA
CATAGAAGAAAG
back to top