EY675384

Overview
NameEY675384
Unique NameEY675384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675384 vs. ExPASy Swiss-Prot
Match: MCCA_SOYBN (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 4.625e-23
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:   66 KLGVELXDEEEXXXKXSFENXXGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHG 290
            KLG+EL ++EE   K   E    P G+V++PMAGLVVKVL  + T+VEEGQP+LVLEAMKMEHVVKAP++G VHG
Sbjct:  636 KLGLELSEDEESQHKPKVETSANPQGTVVAPMAGLVVKVLVENKTRVEEGQPVLVLEAMKMEHVVKAPSSGYVHG 710          

HSP 2 Score: 30.0314 bits (66), Expect = 4.625e-23
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 1
Query:  289 GLQVTAGQQVSDGSVLF 339
            GLQ+  G+QVSDGSVLF
Sbjct:  710 GLQLMVGEQVSDGSVLF 726          
BLAST of EY675384 vs. ExPASy Swiss-Prot
Match: MCCA_ARATH (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=MCCA PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 5.613e-20
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 3
Query:   66 KLGVELXDEEEXXX-KXSFENXXGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVV 284
            K+G+E  ++EE    + S E    PPG++++PMAGLVVKVL  +  KV++GQPILVLEAMKMEHVVKAP++G +
Sbjct:  639 KVGIEFSEDEEGVQHRTSSETSSHPPGTIVAPMAGLVVKVLVENEAKVDQGQPILVLEAMKMEHVVKAPSSGSI 712          

HSP 2 Score: 33.113 bits (74), Expect = 5.613e-20
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  292 LQVTAGQQVSDGSVLFRLPG 351
            L+V AGQQVSDGS LFR+ G
Sbjct:  715 LKVKAGQQVSDGSALFRIKG 734          
BLAST of EY675384 vs. ExPASy Swiss-Prot
Match: MCCA_ORYSJ (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=MCCA PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.752e-18
Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 3
Query:   69 LGVELXDEEEXXXKXSFENXXGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHG 290
            L  E   ++      S E    P GSVL+PMAGLVVKVL  DG +VEEGQP++V+EAMKMEHVVKAP  G V G
Sbjct:  640 LRAEQSPDDSSQPSASSEARSHPKGSVLAPMAGLVVKVLLKDGARVEEGQPVMVMEAMKMEHVVKAPCAGYVEG 713          

HSP 2 Score: 28.4906 bits (62), Expect = 3.752e-18
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  289 GLQVTAGQQVSDGSVLF 339
            GL+ TAGQQV D SVLF
Sbjct:  713 GLKATAGQQVFDSSVLF 729          
BLAST of EY675384 vs. ExPASy Swiss-Prot
Match: BCCP_SOLLC (Biotin carboxyl carrier protein of acetyl-CoA carboxylase (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.079e-14
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query:  141 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHG 290
            G+V++PM GL VKVL  DG KV+EGQP+LVLEAMKMEHVVKAP  G V G
Sbjct:    1 GTVVAPMVGLEVKVLVKDGEKVQEGQPVLVLEAMKMEHVVKAPANGYVSG 50          

HSP 2 Score: 23.8682 bits (50), Expect = 3.079e-14
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 1
Query:  289 GLQVTAGQQVSDGSVLFRL 345
            GL++  GQ V DG  LF L
Sbjct:   50 GLEIKVGQSVQDGIKLFAL 68          
The following BLAST results are available for this feature:
BLAST of EY675384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MCCA_SOYBN4.625e-2364.00Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
MCCA_ARATH5.613e-2056.76Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
MCCA_ORYSJ3.752e-1858.11Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
BCCP_SOLLC3.079e-1472.00Biotin carboxyl carrier protein of acetyl-CoA carb... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-H01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675384 ID=EY675384; Name=EY675384; organism=Citrus sinensis; type=EST; length=870bp
GGTTGGCAGGGTCGGACCCATTTTATTCATGGATGGCATGGATTGCATCA
CCATCATTCCTTTAAAAGTTGGGGGTNGAGTTGNNTGATGAAGAAGAAAN
TNAANATAAAANTAGTTTTGAGAATGNAANTGGTCCTCCAGGATCTGTGT
TGTCTCCCATGGCTGGTTTAGTGGTCAAGGTTCTTGCGAATGATGGGACA
AAGGTGGAGGAAGGACAACCTATTTTAGTCTTGGAAGCAATGAAGATGGA
GCATGTAGTGAAGGCACCAACTACTGGGGTAGTCCATGGGGCTTCAAGTG
ACAGCTGGACAACAGGTTTCGGATGGTAGTGTTCTCTTTAGGCTTCCAGG
TTGAAGTGGATCAAGTGCTCGGGCCGGATGTATAGGATCTATTTGTGGAG
TTCCTTTCCATTACGAGGCGTGGCTCGAGAAATCCGCAGCATGGTTCAAT
GGATTAAAGGATTTGACCCACTGAAAATTACTTTGGTTGGTAACGGACAA
AATTTCGAAATAGCTTGCTAAGTACCTTTTAAATAACCTCATTTGAAAAA
AATGGTAGTTTCCTCTAAAGTTGGAAAAAGGTAAACAAAAAACTCTTTGA
TAATTTAAATTTTCCTCCTGGGTAAAATAGTGCTTTTTCGGTTTAAAAAA
ATAAAAAAAAAAAAAAAGGGGCGGGCCCCTCAAATTAAAAGATCAAAGGT
GAAAGAAGGGCGTTGCATGTAAAATAAAGATAAACTTAGAGAAGTGGGGC
ACAATAATAAATTCTTAATTCTGTGGACAAATATTTTTTTACTAAGCAAG
GAGAAGGTGAGAAAACTCAGTAGTTAGTACTCAAAATTGTTCCTTGCCTT
TGAGAGCCAAAACCAACCCT
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