EY675379

Overview
NameEY675379
Unique NameEY675379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length990
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675379_ssr886 microsatellite EY675379_ssr886:886..895. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY675379 vs. ExPASy Swiss-Prot
Match: SERC3_HUMAN (Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.861e-11
Identity = 45/164 (27.44%), Postives = 77/164 (46.95%), Query Frame = 3 
Query:   30 HSGWWSAKIVPWIALTIIPFLLPSS-FIQLYGEIAHFGAGVFLLIQLISVISFI-----TWLNDCCLSEKNAERCHIHVMLIATVAXXXXXXXXXXXXXWYTPDPTCLLNIFFITWTLVLLQLMTSVSLHPKI-----NSGFLAPGLMGLYIIFLCWCAIRS*P 488
            H+G+W  KI   I + +  F +P   F  ++  +   GA +F+LIQL+ ++ F      +W+N   + E N    +  ++   +               +YT    C  N FFI+  L+L  + + +S+HPKI      SG L   L+ LY ++L W A+ + P
Sbjct:  130 HNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNR--MEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDGCTENKFFISINLILCVVASIISIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMSNEP 291
[Close]
BLAST of EY675379 vs. ExPASy Swiss-Prot
Match: SERC3_BOVIN (Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.043e-11
Identity = 45/164 (27.44%), Postives = 80/164 (48.78%), Query Frame = 3 
Query:   30 HSGWWSAKIVPWIALTIIPFLLPSS-FIQLYGEIAHFGAGVFLLIQLISVISFI-----TWLNDCCLSEKNAERCHIHVMLIATVAXXXXXXXXXXXXXWYTPDPTCLLNIFFITWTLVLLQLMTSVSLHPKI-----NSGFLAPGLMGLYIIFLCWCAIRS*P 488
            H+G+W  KI   + + +  F +P   F   +  I   GA  F+LIQL+ ++ F      +W+N   + E N +  +  ++ + ++              +YT    C  N FFI++ L+L  +++ +S+HPKI      SG L   L+ LY ++L W A+ + P
Sbjct:  129 HNGFWFFKIAAIVGVMVGSFYIPGGHFNTAWFVIGMVGAAFFILIQLVLLVDFAHSWNESWVNR--MEEGNPKCWYAALLSVTSLFYILSIIFAGLLYTYYTKPDGCTENKFFISFNLILCVVISVLSIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMSNEP 290
[Close]
BLAST of EY675379 vs. ExPASy Swiss-Prot
Match: SERC3_PONAB (Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.602e-11
Identity = 44/164 (26.83%), Postives = 77/164 (46.95%), Query Frame = 3 
Query:   30 HSGWWSAKIVPWIALTIIPFLLPSS-FIQLYGEIAHFGAGVFLLIQLISVISFI-----TWLNDCCLSEKNAERCHIHVMLIATVAXXXXXXXXXXXXXWYTPDPTCLLNIFFITWTLVLLQLMTSVSLHPKI-----NSGFLAPGLMGLYIIFLCWCAIRS*P 488
            H+G+W  KI   I + +  F +P   F  ++  +   GA +F+LIQL+ ++ F      +W+N   + E N    +  ++   +               +YT    C  N FFI+  L+L  + + +S+HPKI      SG L   ++ LY ++L W A+ + P
Sbjct:  130 HNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNR--MEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDGCTENKFFISINLILCVVASIISIHPKIQEHQPRSGLLQSSVITLYTMYLTWSAMSNEP 291
The following BLAST results are available for this feature:
BLAST of EY675379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SERC3_HUMAN3.861e-1127.44Serine incorporator 3 OS=Homo sapiens GN=SERINC3 P... [more]
SERC3_BOVIN5.043e-1127.44Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=... [more]
SERC3_PONAB8.602e-1126.83Serine incorporator 3 OS=Pongo abelii GN=SERINC3 P... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-G07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675379 ID=EY675379; Name=EY675379; organism=Citrus sinensis; type=EST; length=990bp
CAAAGTTGCACGGGACCAGCCATTTATGGCACTCTGGATGGTGGTCTGCA
AAGATTGTCCCTTGGATTGCCTTGACAATCATCCCATTTCTTCTTCCTTC
TTCCTTTATTCAACTCTATGGGGAGATTGCTCATTTTGGTGCCGGGGTCT
TTCTACTAATTCAGCTAATAAGCGTAATCAGTTTCATTACCTGGCTGAAT
GACTGTTGTTTGTCTGAGAAGAATGCAGAAAGATGCCACATCCATGTGAT
GCTAATTGCAACAGTTGCATATATTATATGCATAGTGGGGATCATTATGA
TGTACATTTGGTATACGCCAGATCCTACTTGCCTCCTTAACATATTTTTT
ATTACATGGACTTTGGTGCTCCTCCAACTCATGACGAGTGTTTCTCTTCA
CCCAAAAATAAATTCAGGCTTCCTGGCTCCGGGGCTTATGGGGCTTTATA
TCATATTTCTCTGCTGGTGTGCCATTAGAAGTTGACCACCAGGGGAAACT
TGGCCAACAGAAGGCAGAACCTTTCAAAAAAAACAAATTGGGCTAACTAT
TAAATAGCTTTGTTTTTGCAATACTTTGAATTTGTTACCCCAACCCTTTT
CAAAAGGGATTTGATTCCCCAAAGGCTTTCCCGTTAAAGGAAAAAATGAG
TCCCCCGGGCAAAAAAGAAAGGTTCCAAAAGGGGTTAAGGGATTCTTCCC
ATTTCGTTTTTTGCCCACGGGGGGCAAGGTGAATTTCGCACCGCCATCCC
TCAGAGGGGCGGGAAATAACCCGATGGAATAAATTAAAAAAAATAGAAAA
AATTATATGGATGGGTGGAAACAAAATCCGACGGGGGGGGGAGGAGAAAA
TAAAACATGAAGCAGGGCGAGGACAGGATGCATAAATATATATATGGGAA
ATAAATAACGGGTGGCGCCACACCTATGTCATGATTGGTAAAGAATAAAT
CTCTGGGCTAAGTGTCGTGGACGCTGGTTGTGTGTATGAA
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