EY675337

Overview
NameEY675337
Unique NameEY675337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1017
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 5.668e-66
Identity = 135/214 (63.08%), Postives = 154/214 (71.96%), Query Frame = 2
Query:   56 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAK-GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRDRVHLCFHNVKIKNGXXXXXXXXXXXXPFFKH*RLASKEIWVPQGKS*NPTNYCPP*MRQRKRELPQGRM 685
            MATVTT ASA++FRPC SK RFLTGSSG+LNR+++   + SSA   SFKVEAK GEWLPGLASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIGIINVP+WYDAGK +YFASSSTLF     + FH V+I+              P FK   L   E+  P G   NP N+ P     +++EL  GR+
Sbjct:    1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIE-FILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIF-NPLNFAPT-QEAKEKELANGRL 211          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.263e-65
Identity = 138/213 (64.79%), Postives = 154/213 (72.30%), Query Frame = 2
Query:   56 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAK-GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFRDRVHLCFHNVKIKNGXXXXXXXXXXXXPFFKH*RLASKEIWVPQGKS*NPTNYCPP*MRQRKRELPQGRM 685
            MATVTTQASAA+F PC  KSRFL GSSGKLNR VA +PV  S SASFKVEAK GEWLPGLASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIINVP+WY AGK EYFASSSTLF     L  H V+I+              P FK   L + E+  P G   NP N+ P  +  +++E+  GR+
Sbjct:    1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILS-HYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIF-NPLNFAPT-LEAKEKEIANGRL 210          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.463e-39
Identity = 87/174 (50.00%), Postives = 109/174 (62.64%), Query Frame = 2
Query:  167 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYD-AGKAEYFASSSTLFRDRVHLCFHNVKIKNGXXXXXXXXXXXXPFFKH*RLASKEIWVPQGKS*NPTNYCPP*MRQRKRELPQGRM 685
            P S+     V+AKG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN RWAMLGV GML+PEV TK G++N P+W    GK  YFASSST    RVH+    V+I+              P FK   L   E   P G+  NP N+ P  +  +++EL  GR+
Sbjct:   21 PRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTAL--RVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYP-GRVFNPLNFAP--LENKEKELANGRL 189          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.250e-30
Identity = 65/126 (51.59%), Postives = 84/126 (66.67%), Query Frame = 2
Query:  104 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 472
            A+K+ FL G   ++++ +A     S A   V A  +   W PG   P +L+GSLPGD GFDPLGL  DPE+LKW  QAELV+SRWAMLG  G+ +PE  TKIG++N P WY AG+ EYF  ++TLF
Sbjct:   29 ATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLF 154          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.487e-29
Identity = 62/125 (49.60%), Postives = 83/125 (66.40%), Query Frame = 2
Query:  107 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 472
            +K+ FL G   ++++        S+ +  V A  +   W PG   P +L+GSLPGD GFDPLGLA DPE+L+W  QAELV+ RWAMLG  G+ +PE+ TKIGI+N P WY AG+ EYF  ++TLF
Sbjct:   30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLF 154          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.670e-15
Identity = 51/137 (37.23%), Postives = 75/137 (54.74%), Query Frame = 2
Query:   65 VTTQASAAVFRPCASKSRFLTG---SSGKLNREVALKPVSSS----ASFKVEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAG 436
            +TT ++ AV    +S   FLTG   +   L   V  +  +      A+  V  K  W+P + S      P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAM  V+G+ + + ++ I       W++AG
Sbjct:    1 MTTTSATAVLNGLSSS--FLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAG 129          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.948e-15
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 2
Query:   80 SAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSAS----------FKVEAKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAG 436
            SAAV    +S   FLTG  G  ++ +   P+++                 AK  W+P       L  P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAM  V+G+ + + ++ I       W++AG
Sbjct:    5 SAAVLNGLSSS--FLTG--GNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAG 129          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.768e-15
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 2
Query:  119 FLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY 448
            FL+ +  K    + +   +++   +     +W+PG   P+YL+GS PGD GFD LGL E P NL+ Y ++EL++ RWAML V G+++PE       +   +W     G+A Y
Sbjct:   18 FLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATY 129          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.015e-14
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  203 KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAG 436
            K  W+P +        P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAML V+G+ + + +T I       W++AG
Sbjct:   57 KKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAG 134          
BLAST of EY675337 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.576e-14
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  176 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEYFAS 457
            ++ S +V    EW PG   P +L+GS PGD GFDPLGLA  PEN + + ++E+ + RWAML V G+L+PE       +   +W     G+A Y  +
Sbjct:   36 ATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGN 131          
The following BLAST results are available for this feature:
BLAST of EY675337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CB24_ARATH5.668e-6663.08Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.263e-6564.79Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB120_HORVU3.463e-3950.00Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB12_PETHY2.250e-3051.59Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC2.487e-2949.60Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB4B_SOLLC2.670e-1537.23Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4A_SOLLC5.948e-1537.04Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB11_SOLLC7.768e-1535.71Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4_SPIOL1.015e-1446.43Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB121_HORVU6.576e-1440.63Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-C04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675337 ID=EY675337; Name=EY675337; organism=Citrus sinensis; type=EST; length=1017bp
CCACGCGTCCGCCACCACTCCTGCACTACCACCCTCATAACTCTCGTCGG
GAAACATGGCAACCGTCACAACACAAGCCTCGGCCGCTGTGTTCCGGCCA
TGCGCATCCAAATCCAGGTTCCTTACTGGGTCTTCGGGTAAATTAAATAG
GGAAGTGGCCTTGAAACCAGTGAGCTCAAGCGCTTCTTTCAAAGTTGAAG
CCAAGGGGGAGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGGC
AGCCTCCCCGGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATCC
TGAGAACTTGAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGG
CCATGTTGGGTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATT
GGAATTATTAATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTT
TGCATCATCATCCACCCTTTTTCGTGATCGAGTTCATCTTTGTTTCCACA
ATGTGAAAATAAAAAATGGCAAAACATAAAAAACCCGGAAGTGTCAACAA
AAAACCCCATTTTTTAAGCATTAAAGATTGGCCTCAAAAGAAATTTGGGT
ACCCCAGGGGAAATCTTAAAACCCAACAAACTATTGCCCCCCTTAGATGA
GGCAAAGGAAAAGGGAGTTGCCACAGGGGAGAATGGGCAAGGGTTGGGAA
TCTCAGGGGAATTTTATGGACAACCACATAGAGAACAGGAAAAGGGGCCT
ATTAAAAAACCCCCATGGAAATAATTCTCTATAACCATGTGGACAAACAC
CAAATTTACCAAAACAACATGGGGGGAGAAATTAAAATAAAAAGGGAGTA
GGAACATATTTGTGAAAACCAGTGTTTTTTTCTTTTTTTAAAAACCCGAT
GAAGATATTGTTAAATTTTTTTTATGGAAATGAGAAAATTGATAACCTCG
TATGGATTATATGAAATAGATATGATAGAAACCCCCACACACCCTTGGTG
ACGGGGTGGAAGGGGAG
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