EY675312

Overview
NameEY675312
Unique NameEY675312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1025
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 9.335e-34
Identity = 71/116 (61.21%), Postives = 84/116 (72.41%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP I S+ G+   +A WFKAG+ IFS+ GL YLGNP  I A +ILAIWAC+  LMGFVE Y +GGG  G+ L P+YPGGA+DP   AD+PD FAELK  E+ NGR
Sbjct:  103 RWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGR 218

HSP 2 Score: 23.8682 bits (50), Expect = 9.335e-34
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K P++   + + D  A
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPIENLFDHLADPVA 251
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.729e-33
Identity = 68/116 (58.62%), Postives = 83/116 (71.55%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP I S+ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMGFVE Y +GGG  G+ L  +YPGGA+DP   AD+P+ FAELK  E+ NGR
Sbjct:  103 RWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGR 218

HSP 2 Score: 25.7942 bits (55), Expect = 7.729e-33
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K P++   + I D  A
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPIENLSDHINDPVA 251
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.911e-32
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL C FP +  + G+   +A WFKAG+ IF++ GL YLGNP  I A +ILAIWA +  LMGFVE Y +GGG  G+ L PLYPGGA+DP   AD+PD FAELK  EL NGR
Sbjct:  102 SRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGR 218

HSP 2 Score: 24.6386 bits (52), Expect = 4.911e-32
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K P++   + + D  A
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVA 251
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.397e-32
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL CVFP + S+ G+   +A WFKAG+ IFS+ GL YLGNP  I A +ILAIWAC+  LMG VE Y I GG  G+ + PLYPGG++DP   AD+P+ FAELK  EL NGR
Sbjct:   99 SRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGR 215

HSP 2 Score: 25.7942 bits (55), Expect = 6.397e-32
Identity = 14/30 (46.67%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + I D
Sbjct:  216 LAMFSMFGFFVQAIVTGKGPLENLADHIAD 245
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 8.330e-32
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL CVFP I S+ G+   +A WFKAG  IFS+ GL YLGNP  + A +ILAIWA +  LMGFVE Y +GGG  G+ L  +YPGGA+DP   AD+PD FAELK  EL NGR
Sbjct:  100 SRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGR 216

HSP 2 Score: 24.2534 bits (51), Expect = 8.330e-32
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K P++   + + D  A
Sbjct:  217 LAMFSMFGFFVQAIVTGKGPIENLFDHVADPVA 249
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 8.330e-32
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL CVFP I S+ G+   +A WFKAG  IFS+ GL YLGNP  + A +ILAIWA +  LMGFVE Y +GGG  G+ L  +YPGGA+DP   AD+PD FAELK  EL NGR
Sbjct:  100 SRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGR 216

HSP 2 Score: 24.2534 bits (51), Expect = 8.330e-32
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K P++   + + D  A
Sbjct:  217 LAMFSMFGFFVQAIVTGKGPIENLFDHVADPVA 249
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.085e-31
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL C+FP + S+ G+   +A WFKAG  IFS+ GL YLGNP  + A +ILAIWA +  LMG +E Y +GGG  G+ L PLYPGGA+DP   AD+P+ FAELK  E+ NGR
Sbjct:  101 SRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGR 217

HSP 2 Score: 25.409 bits (54), Expect = 1.085e-31
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K P++   + I D  A
Sbjct:  218 LAMFSMFGFFVQAIVTGKGPIENLADHIADPVA 250
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.412e-31
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP +F++ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y + GG  G+ + PLYPGG++DP   AD+P+ FAELK  E+ NGR
Sbjct:  104 RWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 219

HSP 2 Score: 25.0238 bits (53), Expect = 1.412e-31
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  220 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 249
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.416e-31
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP I S+ G+   +A WFKAG+ IFS+ GL YLGNP  I A +ILAIWA +  LMGFVE Y +GGG  G+ L  +YPGGA+DP   AD+P+ FAELK  E+ NGR
Sbjct:   75 RWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGR 190

HSP 2 Score: 25.409 bits (54), Expect = 1.416e-31
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K P++   + I D  A
Sbjct:  191 LAMFSMFGFFVQAIVTGKGPIENLSDHIADPVA 223
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.839e-31
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP I S+ G+   +A WFKAG+ IFS+ GL YLGNP  I A +ILAIWA +  LMGFVE Y +GGG  G+ L  +YPGGA+DP   AD+P+ FAELK  E+ NGR
Sbjct:  103 RWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGR 218

HSP 2 Score: 24.6386 bits (52), Expect = 1.839e-31
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K P++   + + D  A
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPIENLYDHVADPVA 251
The following BLAST results are available for this feature:
BLAST of EY675312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB21_GOSHI9.335e-3461.21Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB24_SOLLC7.729e-3358.62Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB215_PEA4.911e-3258.12Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_MAIZE6.397e-3258.12Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_ORYSJ8.330e-3258.97Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI8.330e-3258.97Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI1.085e-3155.56Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_PETSP1.412e-3156.03Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB25_SOLLC1.416e-3158.62Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB26_PETSP1.839e-3158.62Chlorophyll a-b binding protein 37, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-H12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675312 ID=EY675312; Name=EY675312; organism=Citrus sinensis; type=EST; length=1025bp
CACGCGTCCGGCCATGCTTGAAGCTCTCTTCTGCGTCTTCCCTGTAATCT
TCTCCCAAAAAGGACTCCACTTAAACAAAGCAGCTTGGTTCAAGGCTGGC
ACATCTATATTCTCTGACAGTGGCCTTCACTATCTAGGCAACCCCTAGCA
CATTCAAGCCTCCAACATTTTGGCTATCTGGGCCTGCCGGGATGAGCTTA
TGGGTTTTGTTGAATGATACTAAATTGGTGGCGGTAATCCTGGTAAACGA
CTTCACCCTCTTTACCCTGGTGGTGCTTATGACCCAGGTGTTTTCGCGGA
TAATCCCGATAAATTTGCTGAGTTGAAGGACAACGAGCTCAATAATGGCA
GATCTGGCTATGATCTCATTGTTAGGATTCCTTGTCCACGCAATTGACAA
TAGAAAGATACCATTAAAATGCGCGAGAGAACCCATTAAAGATACTGAGG
CCCAAGAATGCAAGTGCTAAAACTTTTAAAATAAATTCCAAGGAAGCTTA
GAAAACTTAAGAAATGAAAGTAGTCCTTTCTACATCTAAAAAAACTTAAT
CAAGATAACCTAAGAGGGCAATCAAAGTAAAGCCATAAACCTTGAATCAT
GTAAAAAAAACACGATAAGGGTAACGAATAAACAAGGTTATAGATACCAA
ATTATTTCCATTTACGAAAAATTGCAAAAAAATACAATTATAAAAAAAAA
TTAAGTAAAAAACTACCAAAAGGAAAAGTAAAATAAAATAAAGGAAAGAT
AAAAGAAAAAGATAAAAAAAGAAAAAAAAAAAAACAAGAGAGGGAGAGAG
CAGAGACTGAGCAAAGAAAAAAGAAAGTACAGAGAAAACAAAAAGAGTAA
AAAAAGAAAGTAAAGAAATATAAAGGAACTAGAGCACACAATAAAACAAA
ATGTAACAACATATAATCAAGCTTGTGAAACGAACAACCAAAGCATGAGG
AAGAAAATAGATATGGGACAAAAACGAGAAAATAAGAAGTCAAGAAATGA
TCAAATAGAATGATATTAGGATAAC
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