EY675271

Overview
NameEY675271
Unique NameEY675271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1001
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675271 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 7.054e-69
Identity = 146/250 (58.40%), Postives = 169/250 (67.60%), Query Frame = 1
Query:    4 LQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAESPAIVNLLEIMGEFTPDQQRAFCQFVTGCTSSFNRVGWRC*IQSLPLSKSISSPAP*YSIKREPGPSESAE*KTCPMAMDCWQFP*TLPLSLTRGNFLPKKRVYAINQGAGVF 753
            LQEL V++ RK +LE +  DN     DL  RG  IEDL L+FTLPGYP+YIL+ GDE VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQVFDITSLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY A+SPAI+NLLEIMGE T DQQRAFCQFVTG        G       L + +  SS +   +     G SE+A+    P  M C  +    P S      + KK +YAIN+G G F
Sbjct: 1642 LQELRVVVARKHYLEGVGGDNSSTISDLCLRGCRIEDLSLEFTLPGYPEYILRSGDEIVDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTG-APRLPPGGLAVLNPKLTIVRKHSSTSS--AAANGAGASETAD-DDLPSVMTCANYLKLPPYSTK--EIMYKKLLYAINEGQGSF 1885          
BLAST of EY675271 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.309e-42
Identity = 107/252 (42.46%), Postives = 145/252 (57.54%), Query Frame = 1
Query:    4 LQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAESPAIVNLLEIMGEFTPDQQRAFCQFVTGCTSSFNRVGWRC*IQSLPLSKSISSPAP*YSIKREPGPSESAE*KTCPMAMDCWQFP*TLPLSLTRGNFLPKKRVYAINQGAGVF 753
            L EL  ++ RK+       D+     DL F G  IEDLCL+F LPGY DY L P   N  V+++NLEEYI  +V+ATV  GI +Q+EAFR+GFNQVF I  L+IF   EL+ +LCG  +L+    + +HIKFDHGYT+ SP +  LL+I+ EF  +QQRAF QFVTG                LP    ++S +P  +I R+ G S+S++    P  M C  +    P S      + +K +YAI +G G F
Sbjct: 1266 LVELQALVRRKKLFAEAHGDSGAAKCDLSFHGTKIEDLCLEFALPGYTDYDLAPYSANDMVNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGS-------------PRLP-HGGLASLSPKLTIVRKHG-SDSSD-TDLPSVMTCANYLKLPPYSSKEK--MKEKLIYAITEGQGSF 1499          
BLAST of EY675271 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.551e-32
Identity = 76/169 (44.97%), Postives = 106/169 (62.72%), Query Frame = 1
Query:   13 LHVIICRKQHLE---SMTSDNCEEAVD-LRFRGAPIEDLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCG-RRELWEPAALAEHIKFDHGYTAESPAIVNLLEIMGEFTPDQQRAFCQFVTG 498
            L  I+ +K+ LE   S T ++ + A++ L   G  +EDL LDFTLPG+P+  LK G ++  V I+NLEEY+ LV+   +  G+ RQ ++FR GF  VF ++ LQ F P ELD LLCG + + W+   L E  + DHGYT +S A+  L EI+  F  +QQR F QFVTG
Sbjct: 1752 LEDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTG 1920          

HSP 2 Score: 23.483 bits (49), Expect = 2.551e-32
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 3
Query:  519 GGLAVLNPKLTFVKKHF 569
            GG   LNP LT V+K F
Sbjct: 1927 GGFRSLNPPLTIVRKTF 1943          
BLAST of EY675271 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.936e-26
Identity = 61/133 (45.86%), Postives = 81/133 (60.90%), Query Frame = 1
Query:  106 IEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAESPAIVNLLEIMGEFTPDQQRAFCQFVTG 498
            +EDL LDFTLPG+P   L P   +  +   N+ +Y++ V+D TV  G+ +Q+EAF+ GF+ VF  TSLQ+ T HEL  L     E W  A L + I  DHGYT ESP I  LL +M +    +QR F QF+TG
Sbjct: 1443 LEDLHLDFTLPGFPSIELIPDGASTPVTTFNVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITG 1575          

HSP 2 Score: 21.9422 bits (45), Expect = 3.936e-26
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  519 GGLAVLNPKLTFVKK 563
            GG A LNP LT V++
Sbjct: 1582 GGFAGLNPPLTVVRR 1596          
BLAST of EY675271 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.464e-21
Identity = 52/143 (36.36%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  106 IEDLCLDFT------LPGYPDYILKPG--DENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAESPAIVNLLEIMGEFTPDQQRAFCQFVTGCTS 507
            IEDL L+F       + G+    LKP   DE + ++N EEY+ L+ D  + TGI +QMEAFR GFN+VF +  L  F+  E+  +LCG +   W    +  + +   GYT +SP  +  + ++   + D+++AF QF TGC++
Sbjct: 2407 IEDLGLNFQFCPSSRIYGFTAVDLKPSGEDEMITMDNAEEYVDLMFDFCMHTGIQKQMEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCST 2549          

HSP 2 Score: 26.5646 bits (57), Expect = 1.464e-21
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  516 PGGLAVLNPKLTFVKK 563
            PGGLA L+P+LT V+K
Sbjct: 2552 PGGLANLHPRLTVVRK 2567          
BLAST of EY675271 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.154e-17
Identity = 67/218 (30.73%), Postives = 101/218 (46.33%), Query Frame = 1
Query:  106 IEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAESPAIVNLLEIMGEFTPDQQRAFCQFVTGCTSSFNRVGWRC*IQSLPLSKSISSPAP*YSIKREPGPSESAE*KTCPMAMDCWQFP*TLPLSLTRGNFLPKKRVYAINQGAGVF 753
            +E L L FT+PG  D  L PG  N  +N  N+EEYI  V+D  +  GI +Q++AF  GF++VF    + I  P EL  +     E W  A L  ++  +HGYT +S  I + + I+  F   ++R F QF+TG                LP+     S  P +++  +         +  P  M C  +   LP   T  + +  +   AI +GAG F
Sbjct: 1279 LESLSLTFTVPGNDDIELIPGGCNKSLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGS-------------PKLPIG-GFKSLNPKFTVVLKHAEDGLTADEYLPSVMTCANYL-KLP-KYTSKDIMRSRLCQAIEEGAGAF 1480          
BLAST of EY675271 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 4.203e-13
Identity = 50/147 (34.01%), Postives = 80/147 (54.42%), Query Frame = 1
Query:   85 LRFRGAPIEDLCLDFTLP-----GYPD-YILKPGDENVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAESPAIVNLLEIMGEFTPDQQRAFCQFVTG 498
            L + G   +D+ + F +      G P  Y LK   + + I N   +E+++L  D  +   + +Q +AFR GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT +S  I    EI+  FT +Q+R F QF TG
Sbjct:  666 LEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTG 811          
BLAST of EY675271 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.647e-12
Identity = 49/147 (33.33%), Postives = 78/147 (53.06%), Query Frame = 1
Query:   85 LRFRGAPIEDLCLDFTLP-----GYPD-YILKPGDENVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAESPAIVNLLEIMGEFTPDQQRAFCQFVTG 498
            L + G+  +D+ + F +      G P  Y LK   + + I N   +E++    D  +   + +Q +AFR GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT ES  I    EI+  FT +Q+R F  F TG
Sbjct:  676 LEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVISYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTG 821          
The following BLAST results are available for this feature:
BLAST of EY675271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
UPL3_ARATH7.054e-6958.40E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH4.309e-4242.46E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN2.551e-3244.97Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO3.936e-2645.86Probable ubiquitin fusion degradation protein C12B... [more]
HECD1_HUMAN1.464e-2136.36E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
UFD4_YEAST2.154e-1730.73Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
UBE3A_HUMAN4.203e-1334.01Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]
UBE3A_MOUSE4.647e-1233.33Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-D11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675271 ID=EY675271; Name=EY675271; organism=Citrus sinensis; type=EST; length=1001bp
ATTTTGCAAGAGTTGCACGTCATCATTTGTCGAAAACAACATTTAGAATC
AATGACCTCTGATAATTGCGAAGAAGCTGTGGACTTGCGTTTTCGTGGGG
CCCCGATTGAAGATCTTTGCCTGGATTTTACTCTTCCTGGTTATCCAGAC
TATATTTTGAAACCAGGAGATGAAAATGTTGACATTAATAACTTGGAGGA
ATACATATCCTTGGTAGTTGATGCCACTGTCAAGACAGGCATCATGCGGC
AAATGGAAGCTTTTAGAGCTGGCTTCAATCAGGTCTTTGACATCACATCA
TTACAAATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAG
AGAGTTGTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCATG
GATACACTGCCGAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGA
GAATTCACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGGTG
CACCTCGTCTTTCAACCGGGTGGGTTGGCGGTGCTGAATCCAAAGCTTAC
CTTTGTCAAAAAGCATTTCTTCACCTGCACCCTAATACAGCATCAAAAGG
GAACCGGGGCCCTCGGAATCAGCCGAATGAAAAACTTGCCCAATGGCCAT
GGACTGTTGGCAATTTCCCTGAACCCTTCCCCTTTCCCTTACCAGGGGAA
ATTTTTTACCAAAAAAACGGGTTTATGCAATTAACCAAGGGGCAGGGGTT
TTTTGTTTTTGCGTAGGAGATTTCACAAATCACCCAAAAGGGACTTTTGG
GTTATTTAATTAATTGGTGGGCATAGGGGCCCTTTCCCCCGTGCCATGGG
GGAGAAATTATCACCTCTGTAGAAAGTAAGCCACCCAATTATTCTCGAGC
ACAAAAAAAAATGGGGGTGCCCTTTTTTCCCCGCCAGCCCCGTGTGTGAA
AAAGGAGGGGTGTAGTCGCCCTTGCAGATGGGCCGAGGGATGTGCATGTT
G
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