EY675265

Overview
NameEY675265
Unique NameEY675265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1028
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675265 vs. ExPASy Swiss-Prot
Match: IDH_AZOVI (Isocitrate dehydrogenase [NADP] OS=Azotobacter vinelandii GN=icd PE=1 SV=5)

HSP 1 Score: 277.715 bits (709), Expect = 2.771e-75
Identity = 144/193 (74.61%), Postives = 155/193 (80.31%), Query Frame = 3
Query:   39 SRVDAMKFTLERTRKGLDTISVTGNVSRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRKVGNIDNRGSHFXXXXXXXXXXXXXTEDTALQAQFGELAKTLTANEATIVAELNAVQGKPVDI 617
            S V+A +F+L R R+G DTISVTGNV RDYLTDLFPIMELGTSAKMLSIVPLM+GGGLFETGAGGSAPKHVQQ +EE +LRWDSLGEFLALAASLEHLG  Y NPKALVL+ TLDQATG+ LDNNKSP+RKVG IDNRGSHF             TED  LQAQF  +AK LT NE  IV EL A QGKPVDI
Sbjct:  520 SPVEATRFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGSAPKHVQQFLEEGYLRWDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARKVGEIDNRGSHFYLALYWAQALAAQTEDKELQAQFTGIAKALTDNETKIVGELAAAQGKPVDI 712          

HSP 2 Score: 26.9498 bits (58), Expect = 2.771e-75
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  622 GYYAPNAELTSKAHAP 669
            GYY PN +LTSKA  P
Sbjct:  714 GYYHPNTDLTSKAIRP 729          
BLAST of EY675265 vs. ExPASy Swiss-Prot
Match: IDH2_COLMA (Isocitrate dehydrogenase [NADP] 2 OS=Colwellia maris GN=icd2 PE=1 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 1.163e-66
Identity = 131/191 (68.59%), Postives = 144/191 (75.39%), Query Frame = 3
Query:   45 VDAMKFTLERTRKGLDTISVTGNVSRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRKVGNIDNRGSHFXXXXXXXXXXXXXTEDTALQAQFGELAKTLTANEATIVAELNAVQGKPVDI 617
            V A +FTL R  KG D ISVTGNV RDYLTDLFPI+ELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQ  +EN LRWDSLGEFLALAASLEH+ V   N +A +L+ TLD ATG+FLD NKSPSRKVG +DNRGSHF             T DT LQA F  +A+ LT  E  IVAELNA QG  +D+
Sbjct:  524 VKACEFTLARVAKGEDAISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFEKENHLRWDSLGEFLALAASLEHVAVTTGNARAQILADTLDAATGKFLDTNKSPSRKVGELDNRGSHFYLAMYWAQALAAQTTDTELQASFSSVAQALTKQEEKIVAELNAAQGPAIDL 714          
BLAST of EY675265 vs. ExPASy Swiss-Prot
Match: IDH_COREF (Isocitrate dehydrogenase [NADP] OS=Corynebacterium efficiens GN=icd PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.568e-57
Identity = 119/193 (61.66%), Postives = 135/193 (69.95%), Query Frame = 3
Query:   39 SRVDAMKFTLERTRKGLDTISVTGNVSRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRKVGNIDNRGSHFXXXXXXXXXXXXXTEDTALQAQFGELAKTLTANEATIVAELNAVQGKPVDI 617
            S V+A +  ++R R+G DTISVTGNV RDY TDLFPI+ELGTSAKMLS+VPLM GGGLFETGAGGSAPKHVQQ++EEN LRWDSLGEFLALA S  H     NN KA VL+  LD+AT + L+  KSPSRKVG IDNRGSHF             TED  L   F  +A+ L    A I A L   QGKPVD+
Sbjct:  507 SPVEATQHAIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQVIEENHLRWDSLGEFLALAESFRHELNTRNNTKAGVLADALDRATEKLLNEEKSPSRKVGEIDNRGSHFWLATYWADELANQTEDAELAETFAPVAEALNNQAADIDAALIGEQGKPVDL 699          

HSP 2 Score: 23.8682 bits (50), Expect = 1.568e-57
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 1
Query:  619 GGYYAPNAELTSKAHAP 669
            GGYYAP+ E TS    P
Sbjct:  700 GGYYAPSDEKTSAIMRP 716          
BLAST of EY675265 vs. ExPASy Swiss-Prot
Match: IDH_CORGL (Isocitrate dehydrogenase [NADP] OS=Corynebacterium glutamicum GN=icd PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.353e-57
Identity = 125/221 (56.56%), Postives = 146/221 (66.06%), Query Frame = 3
Query:   39 SRVDAMKFTLERTRKGLDTISVTGNVSRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRKVGNIDNRGSHFXXXXXXXXXXXXXTEDTALQAQFGELAKTLTANEATIVAELNAVQGKPVDI--RWLLRTERRTDQQSPCAQAAPLTPAI 695
            S V+A + +++R R+G DTISVTGNV RDY TDLFPI+ELGTSAKMLS+VPLM GGGLFETGAGGSAPKHVQQ+ EEN LRWDSLGEFLALA S  H   N  N KA VL+  LD+AT + L+  KSPSRKVG IDNRGSHF             TED  L A F  +A+ L    A I A L AVQG   D+   +    E+ T+   P AQ   +  A+
Sbjct:  516 SPVEATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQVQEENHLRWDSLGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKSPSRKVGEIDNRGSHFWLTKFWADELAAQTEDADLAATFAPVAEALNTGAADIDAALLAVQGGATDLGGYYSPNEEKLTNIMRPVAQFNEIVDAL 736          
The following BLAST results are available for this feature:
BLAST of EY675265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IDH_AZOVI2.771e-7574.61Isocitrate dehydrogenase [NADP] OS=Azotobacter vin... [more]
IDH2_COLMA1.163e-6668.59Isocitrate dehydrogenase [NADP] 2 OS=Colwellia mar... [more]
IDH_COREF1.568e-5761.66Isocitrate dehydrogenase [NADP] OS=Corynebacterium... [more]
IDH_CORGL8.353e-5756.56Isocitrate dehydrogenase [NADP] OS=Corynebacterium... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-D03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675265 ID=EY675265; Name=EY675265; organism=Citrus sinensis; type=EST; length=1028bp
TTATTTTTTTTTTGCGGCTACTGCGGTACGGTCCGGATTCCCGGGTCGAC
GCGATGAAGTTCACCCTGGAGCGCACCCGCAAGGGCCTGGACACCATCTC
GGTGACCGGCAACGTATCGCGCGACTACCTGACTGACCTGTTCCCGATCA
TGGAACTGGGCACCAGCGCCAAGATGCTGTCGATCGTGCCACTGATGAAC
GGTGGCGGCCTGTTCGAAACCGGTGCCGGCGGTTCGGCTCCGAAGCACGT
ACAGCAACTGGTTGAAGAAAACTTCCTGCGCTGGGATTCCCTGGGCGAGT
TCCTGGCCCTGGCCGCGTCCCTCGAGCATTTGGGTGTGAACTACAACAAC
CCGAAAGCCCTGGTGCTGTCCAAGACCTTGGACCAGGCCACCGGCCAGTT
CCTCGACAACAACAAGTCACCATCGCGCAAAGTCGGCAACATCGACAACC
GCGGCAGCCACTTCTACCTGGCTCTGTACTGGGCTCAAGCCCTGGCCGCC
CAGACGGAAGACACTGCACTGCAAGCGCAGTTTGGCGAACTGGCCAAGAC
CCTGACCGCGAACGAAGCAACCATCGTTGCCGAGCTCAACGCCGTTCAGG
GCAAGCCAGTGGACATTCGGTGGCTACTACGCACCGAACGCCGAACTGAC
CAGCAAAGCCCATGCGCCCAAGCCGCCCCCCTCACGCCGGCAATCCCTGC
CCTGGGGTAAGGGTTGTAAGGAAGCAAAAAAGCCCCCGGCCCTGTGCCGG
GGGTTTTTGTTTCTGAAACTGGGGGTTTTTGATTGAAAAAACCCCATCTC
AAAAGGTGGGGAGAGTGTTCCAGCCCTTAAGCCATCATTGACGCTGGCTC
AAGACAAGCCCATCTCAATATTAATGGTCCAGACATGTTAACTTACATGG
GACGCTGAGTATGATCATGTGAATCGAGATGATGGGGGAAAAGACCACGG
AGGCGTAAGAATATCCAATAAAGATGAATGCTTTAATCGGAGCAGAAATA
CAACCTCTCATCCATTTTTTAATTATTC
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