EY675183

Overview
NameEY675183
Unique NameEY675183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6913 contig Csv1_Contig6913:14..458. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.110e-37
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MRYFH LRNKF CPIVN+D LWS+VP++VKAK+SKDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct:   58 MRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.472e-37
Identity = 73/89 (82.02%), Postives = 83/89 (93.26%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MRYFH LRNKF CPIVN+D LWS+VP++VKAK++KDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct:   58 MRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_TETTH (60S ribosomal protein L27a OS=Tetrahymena thermophila GN=RPL27A PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.465e-23
Identity = 55/91 (60.44%), Postives = 67/91 (73.63%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKD--NVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR FH  +N  HCP+VN+D LWS+V    + K ++D   VP+IDVT+ G+FKVLGKG LP NQPVVVKAK  SKTAE++I   GGA VLTA
Sbjct:   60 MRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP-NQPVVVKAKYFSKTAERRIVAVGGACVLTA 149          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_OSCBR (60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.720e-23
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR FH  +N  +CP VNVD LW++VP+E K K S +  P+ID  + GYFKVLGKG+LP+ QP++VKAK  S  AE KIK AGGA +L A
Sbjct:   58 MRVFHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPLIVKAKFFSHEAENKIKAAGGACILVA 145          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.720e-22
Identity = 48/92 (52.17%), Postives = 68/92 (73.91%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR+FH LRN++HCP V+++ +W++VP+ V+   +  N    P++DVTQ G+FKVLG G+LP  QP++VKA+  SK AEKKIK  GGA +L A
Sbjct:   58 MRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-TQPIIVKARYFSKVAEKKIKAVGGACILVA 148          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_EUPCR (60S ribosomal protein L27a OS=Euplotes crassus GN=RPL27A PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.535e-22
Identity = 51/91 (56.04%), Postives = 69/91 (75.82%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQE--VKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR+FH +RN+++CP +N+  LWS+V +E   KA+  K  V +IDV + GY+KVLGKG+LPE  P+VVKAKL + TAEK+IK+ GGA VL A
Sbjct:   58 MRHFHLMRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLPE-VPLVVKAKLFTPTAEKRIKQVGGACVLRA 147          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_RAT (60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 4.684e-20
Identity = 48/92 (52.17%), Postives = 66/92 (71.74%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR++H  RN+  CP VN+D LW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   58 MRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_MACFA (60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.684e-20
Identity = 48/92 (52.17%), Postives = 66/92 (71.74%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR++H  RN+  CP VN+D LW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   58 MRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 4.684e-20
Identity = 48/92 (52.17%), Postives = 66/92 (71.74%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            MR++H  RN+  CP VN+D LW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   58 MRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of EY675183 vs. ExPASy Swiss-Prot
Match: RL27A_PONAB (60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 6.117e-20
Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 2
Query:   11 MRYFHTLRNKFHCPIVNVDTLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 277
            M+++H  RN+  CP VN+D LW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   58 MKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148          
The following BLAST results are available for this feature:
BLAST of EY675183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
R27A2_ARATH1.110e-3783.1560S ribosomal protein L27a-2 OS=Arabidopsis thalia... [more]
R27A3_ARATH2.472e-3782.0260S ribosomal protein L27a-3 OS=Arabidopsis thalia... [more]
RL27A_TETTH3.465e-2360.4460S ribosomal protein L27a OS=Tetrahymena thermoph... [more]
RL27A_OSCBR7.720e-2357.3060S ribosomal protein L27a OS=Oscheius brevesophag... [more]
RL27A_DICDI1.720e-2252.1760S ribosomal protein L27a OS=Dictyostelium discoi... [more]
RL27A_EUPCR6.535e-2256.0460S ribosomal protein L27a OS=Euplotes crassus GN=... [more]
RL27A_RAT4.684e-2052.1760S ribosomal protein L27a OS=Rattus norvegicus GN... [more]
RL27A_MACFA4.684e-2052.1760S ribosomal protein L27a OS=Macaca fascicularis ... [more]
RL27A_BOVIN4.684e-2052.1760S ribosomal protein L27a OS=Bos taurus GN=RPL27A... [more]
RL27A_PONAB6.117e-2051.0960S ribosomal protein L27a OS=Pongo abelii GN=RPL2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-C03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675183 ID=EY675183; Name=EY675183; organism=Citrus sinensis; type=EST; length=445bp
CACNCGTCCGATGAGGTACTTCCACACACTGCGTAATAAATTTCATTGCC
CAATTGTGAACGTCGACACGCTTTGGTCGATGGTACCTCAGGAGGTCAAA
GCCAAGGCTTCCAAAGACAATGTGCCAATGATCGATGTGACTCAGTTTGG
CTACTTTAAGGTTTTGGGTAAGGGCGTTTTGCCTGAGAACCAACCCGTTG
TGGTGAAGGCCAAGCTTGTTTCCAAGACAGCCGAGAAGAAAATTAAAGAA
GCTGGTGGAGCTGTTGTGCTTACTGCTTAGGTTTACTGTTATTGTTTTTA
GAAAATTTTTGTGATATTTTGGATTTCAGTTTTTGAATATTTGACTATTT
TTACATGTAGTTTTGGATGTTTATGTTATCATTTGAAACTTTTTGCTTTA
TATTGAGACCTGTTATTGATTAAAAAAAGAAAAAAAAAAAAAAAA
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